Browse Element(s) Details


OsAffx.6428.1.S1_at

Description tigr:9637.m02499
TID=OsAffx.6428.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2829011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28240OsAffx.6426.1.S1_at11/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_x_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28240OsAffx.22046.3.S1_at1/119+17148190..17149367hypothetical protein
LOC_Os09g28250NANA9+17153074..17153601hypothetical protein
LOC_Os09g28260NANA9+17157640..17163352retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g28270NANA9+17166042..17167607hypothetical protein
LOC_Os09g28280Os.37075.1.S1_at11/119+17170659..171718062-Hydroxyisoflavanone dehydratase, putative, expressed
LOC_Os09g28290OsAffx.6428.1.S1_at11/119+17174189..17174891hypothetical protein
LOC_Os09g28300Os.21902.1.S1_at11/119+17181866..17187377Remorin, C-terminal region family protein, expressed
LOC_Os09g28310Os.15711.1.S1_at11/119+17188975..17193011bZIP transcription factor family protein, expressed
LOC_Os09g28320OsAffx.30064.1.S1_at11/119+17195184..17196285hypothetical protein
LOC_Os09g28330Os.35344.18.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330Os.35344.3.S1_x_at8/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_x_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class
LOC_Os09g28330OsAffx.22940.5.S1_at5/119+17197069..17201792transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6428.1.S1_at--599--332Chr09:17174220..17174244 (25 bp)
ATACTTCTGGGCGTTCTCACTGCTA
LOC_Os09g28290
OsAffx.6428.1.S1_at--856--8652Chr09:17174227..17174251 (25 bp)
TGGGCGTTCTCACTGCTATAGCATC
LOC_Os09g28290
OsAffx.6428.1.S1_at--1131--4632Chr09:17174230..17174254 (25 bp)
GCGTTCTCACTGCTATAGCATCGAC
LOC_Os09g28290
OsAffx.6428.1.S1_at--188--1972Chr09:17174238..17174262 (25 bp)
ACTGCTATAGCATCGACCCATGCAT
LOC_Os09g28290
OsAffx.6428.1.S1_at--910--10011Chr09:17174245..17174269 (25 bp)
TAGCATCGACCCATGCATTGATATA
LOC_Os09g28290
OsAffx.6428.1.S1_at--1087--3511Chr09:17174256..17174280 (25 bp)
CATGCATTGATATAGGGCTAGTTGT
LOC_Os09g28290
OsAffx.6428.1.S1_at--1081--271Chr09:17174267..17174291 (25 bp)
ATAGGGCTAGTTGTTGACACTGAAA
LOC_Os09g28290
OsAffx.6428.1.S1_at--255--5632Chr09:17174282..17174306 (25 bp)
GACACTGAAATTGTTAGAACCATGC
LOC_Os09g28290
OsAffx.6428.1.S1_at--635--3171Chr09:17174290..17174314 (25 bp)
AATTGTTAGAACCATGCAAGTTTTG
LOC_Os09g28290
OsAffx.6428.1.S1_at--788--6051Chr09:17174314..17174338 (25 bp)
GAGTTGTTCTCATAGAATTTGTGAT
LOC_Os09g28290
OsAffx.6428.1.S1_at--373--5232Chr09:17174328..17174351 (24 bp)
GAATTTGTGATTATGGATTTTGGGA
LOC_Os09g28290
Target Sequence 
ATACTTCTGGGCGTTCTCACTGCTATAGCATCGACCCATGCATTGATATAGGGCTAGTTGTTGACACTGAAATTGTTAGA
ACCATGCAAGTTTTGAGTTGTTCTCATAGAATTTGTGATTATGGATTTTGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6428.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis