Browse Element(s) Details


OsAffx.6446.1.S1_at

Description tigr:9637.m02669
TID=OsAffx.6446.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to DNA-binding protein Dof2 - maize (fragment)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2996011/11Dof domain, zinc finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g29930Os.16741.1.S1_a_at11/119+18206620..18213969Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g29940Os.14071.1.S1_at10/119+18216456..18220124Auxin-independent growth promoter, putative, expressed
LOC_Os09g29950Os.54107.1.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.2.S1_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29950Os.54107.1.S1_x_at11/119+18222865..18229941prolyl oligopeptidase family protein, expressed
LOC_Os09g29960OsAffx.6446.1.S1_at11/119+18233923..18234868Dof domain, zinc finger family protein, expressed
LOC_Os09g29970Os.11662.1.S1_at11/119+18236699..18239535TMV-MP30 binding protein 2C, putative, expressed
LOC_Os09g29980Os.21903.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29980Os.33600.1.S1_at11/119+18239808..18244316transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os09g29990OsAffx.17967.1.S1_at11/119+18247970..18248731hypothetical protein
LOC_Os09g30000OsAffx.30092.1.S1_at11/119+18251434..18253020hypothetical protein
LOC_Os09g30010Os.56233.1.S1_s_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os09g30010OsAffx.30093.1.S1_at11/119+18256643..18257801Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6446.1.S1_at--826--5411Chr09:18234445..18234469 (25 bp)
GAAGCCACAACCAAGAAAGCCCCGG
LOC_Os09g29960
OsAffx.6446.1.S1_at--167--5311Chr09:18234546..18234570 (25 bp)
GAAGGAGCACCTGGACACGAGCCCG
LOC_Os09g29960
OsAffx.6446.1.S1_at--716--5631Chr09:18234559..18234583 (25 bp)
GACACGAGCCCGTTCGAGTGGCCGT
LOC_Os09g29960
OsAffx.6446.1.S1_at--1024--8791Chr09:18234644..18234668 (25 bp)
TGTTCCTTAACCTGCCATGACAAGC
LOC_Os09g29960
OsAffx.6446.1.S1_at--1129--8951Chr09:18234661..18234685 (25 bp)
TGACAAGCCTCTCCCGGACGAACGA
LOC_Os09g29960
OsAffx.6446.1.S1_at--1002--6131Chr09:18234689..18234713 (25 bp)
GATGGTTAGCAAAAAACTTCCAAGT
LOC_Os09g29960
OsAffx.6446.1.S1_at--531--10651Chr09:18234706..18234730 (25 bp)
TTCCAAGTTTTATCGATCAAGTTCT
LOC_Os09g29960
OsAffx.6446.1.S1_at--344--9731Chr09:18234722..18234746 (25 bp)
TCAAGTTCTTGATTTCACCTCTGCT
LOC_Os09g29960
OsAffx.6446.1.S1_at--184--4791Chr09:18234744..18234768 (25 bp)
GCTCCATCTCAGTTTCATCAGATTC
LOC_Os09g29960
OsAffx.6446.1.S1_at--78--3572Chr09:18234759..18234783 (25 bp)
CATCAGATTCTAGTTTATTTTCCAA
LOC_Os09g29960
OsAffx.6446.1.S1_at--826--10271Chr09:18234777..18234801 (25 bp)
TTTCCAATCCAAATGCTAACTTAGG
LOC_Os09g29960
Target Sequence 
GAAGCCACAACCAAGAAAGCCCCGGAAGACCTCACCGCGGCGGCAGCGACACAGCCGGCGGTGGCGCTCGGGCTCGGCGT
CGCCGACGGCGGCGGCGGCGGGAAGGAGCACCTGGACACGAGCCCGTTCGAGTGGCCGTCGGGCTGCGACCTCGGGCCGT
ACTGGCCAACCGGCGTGTTCGCCGACACCGATCCATCACTGTTCCTTAACCTGCCATGACAAGCCTCTCCCGGACGAACG
AGAGGATGGTTAGCAAAAAACTTCCAAGTTTTATCGATCAAGTTCTTGATTTCACCTCTGCTCCATCTCAGTTTCATCAG
ATTCTAGTTTATTTTCCAATCCAAATGCTAACTTAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6446.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis