Browse Element(s) Details


OsAffx.6450.1.S1_at

Description tigr:9637.m02705
TID=OsAffx.6450.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3029011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30250OsAffx.30097.1.S1_x_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.17117.1.S1_x_at1/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30260Os.10456.1.S1_at9/119+18426051..18427082expressed protein
LOC_Os09g30270Os.53320.2.S1_x_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.2.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270OsAffx.4931.1.S1_at2/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein
LOC_Os09g30300NANA9+18447444..18447716expressed protein
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30350Os.19234.1.S1_s_at11/119+18469577..18472895expressed protein
LOC_Os09g30350Os.22948.1.S1_s_at11/119+18469577..18472895expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6450.1.S1_at--981--7471Chr09:18444868..18444892 (25 bp)
GTGGTGGTTTGCTCGTTGACCGTCT
LOC_Os09g30290
OsAffx.6450.1.S1_at--533--6851Chr09:18444874..18444898 (25 bp)
GTTTGCTCGTTGACCGTCTCGTTCG
LOC_Os09g30290
OsAffx.6450.1.S1_at--598--9211Chr09:18444929..18444953 (25 bp)
TCCACGACGGCGATCTCCTCAGGAA
LOC_Os09g30290
OsAffx.6450.1.S1_at--145--5752Chr09:18444934..18444958 (25 bp)
GACGGCGATCTCCTCAGGAAGAAGA
LOC_Os09g30290
OsAffx.6450.1.S1_at--282--6411Chr09:18444940..18444964 (25 bp)
GATCTCCTCAGGAAGAAGAAGCCTA
LOC_Os09g30290
OsAffx.6450.1.S1_at--204--5371Chr09:18444954..18444978 (25 bp)
GAAGAAGCCTATGAAACCACCGCCG
LOC_Os09g30290
OsAffx.6450.1.S1_at--1088--5371Chr09:18444993..18445017 (25 bp)
GAAGAAGGTGTCCACGTCGATGTCC
LOC_Os09g30290
OsAffx.6450.1.S1_at--471--2891Chr09:18444997..18445021 (25 bp)
AAGGTGTCCACGTCGATGTCCGGCA
LOC_Os09g30290
OsAffx.6450.1.S1_at--325--7451Chr09:18445000..18445024 (25 bp)
GTGTCCACGTCGATGTCCGGCACGG
LOC_Os09g30290
OsAffx.6450.1.S1_at--716--7491Chr09:18445024..18445048 (25 bp)
GTGGTCGACACGACGGGCATGTATA
LOC_Os09g30290
OsAffx.6450.1.S1_at--521--2171Chr09:18445031..18445055 (25 bp)
ACACGACGGGCATGTATACGGCGGC
LOC_Os09g30290
Target Sequence 
GTGGTGGTTTGCTCGTTGACCGTCTCGTTCGCCGTCTTCCTCTGCGGCCACAGCTCCGGCGTCCACGACGGCGATCTCCT
CAGGAAGAAGAAGCCTATGAAACCACCGCCGCCTTCATCCAAGAAGAAGAAGGTGTCCACGTCGATGTCCGGCACGGTGG
TCGACACGACGGGCATGTATACGGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6450.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis