Browse Element(s) Details


OsAffx.6481.1.S1_at

Description tigr:9637.m02975
TID=OsAffx.6481.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3494011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34900Os.48834.1.S1_at11/119+20336705..20340024bile acid:sodium symporter family protein, putative, expressed
LOC_Os09g34910Os.11357.1.S1_at11/119+20342307..20346711DEAD/DEAH box helicase family protein, expressed
LOC_Os09g34920Os.5109.1.S1_at11/119+20348465..20350420glycosyl hydrolase family 29, putative, expressed
LOC_Os09g34930Os.18431.1.S1_at11/119+20356971..20358605very-long-chain fatty acid condensing enzyme, putative, expressed
LOC_Os09g34940OsAffx.6481.1.S1_at11/119+20358979..20360200hypothetical protein
LOC_Os09g34950OsAffx.6482.1.S1_x_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34950OsAffx.6482.1.S1_at11/119+20363468..20364613TCP family transcription factor containing protein, expressed
LOC_Os09g34960Os.6789.1.S1_at11/119+20366844..20370873Hydroxymethylglutaryl-CoA synthase, putative, expressed
LOC_Os09g34970Os.15713.1.S2_a_at11/119+20371289..20374723Arsenical pump-driving ATPase, putative, expressed
LOC_Os09g34980Os.51759.1.S1_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34980Os.51759.2.S1_s_at11/119+20377141..20383322Zinc knuckle family protein, expressed
LOC_Os09g34990NANA9+20383626..20387289SPX domain-containing protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6481.1.S1_at--734--951Chr09:20359009..20359033 (25 bp)
AGGACGGACTATGAGATGGCAACAG
LOC_Os09g34940
OsAffx.6481.1.S1_at--830--6231Chr09:20359023..20359047 (25 bp)
GATGGCAACAGCACCATTGGAGCTA
LOC_Os09g34940
OsAffx.6481.1.S1_at--608--8511Chr09:20359025..20359049 (25 bp)
TGGCAACAGCACCATTGGAGCTATG
LOC_Os09g34940
OsAffx.6481.1.S1_at--524--5151Chr09:20359027..20359051 (25 bp)
GCAACAGCACCATTGGAGCTATGGG
LOC_Os09g34940
OsAffx.6481.1.S1_at--1147--10851Chr09:20359053..20359077 (25 bp)
TTGGAAGCTAGCAATGGGTAAGGTT
LOC_Os09g34940
OsAffx.6481.1.S1_at--940--5391Chr09:20359056..20359080 (25 bp)
GAAGCTAGCAATGGGTAAGGTTGAT
LOC_Os09g34940
OsAffx.6481.1.S1_at--278--8551Chr09:20359083..20359107 (25 bp)
TGGAGGCAACAATGGCATGGGAAAA
LOC_Os09g34940
OsAffx.6481.1.S1_at--144--8251Chr09:20359121..20359145 (25 bp)
GGCACATTTACCGTTGCGCGACTTG
LOC_Os09g34940
OsAffx.6481.1.S1_at--213--3311Chr09:20359123..20359147 (25 bp)
CACATTTACCGTTGCGCGACTTGGA
LOC_Os09g34940
OsAffx.6481.1.S1_at--90--2071Chr09:20359124..20359148 (25 bp)
ACATTTACCGTTGCGCGACTTGGAA
LOC_Os09g34940
OsAffx.6481.1.S1_at--427--10471Chr09:20359128..20359152 (25 bp)
TTACCGTTGCGCGACTTGGAAAAGA
LOC_Os09g34940
Target Sequence 
AGGACGGACTATGAGATGGCAACAGCACCATTGGAGCTATGGGGTTGGAAGCTAGCAATGGGTAAGGTTGATGGTGGAGG
CAACAATGGCATGGGAAAAATGGATAGCGGGGGGCACATTTACCGTTGCGCGACTTGGAAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6481.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis