Browse Element(s) Details


OsAffx.6492.1.S1_at

Description tigr:9637.m03058
TID=OsAffx.6492.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3633011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36290Os.12157.1.S1_at11/119+20942013..20945412Ser/Thr protein phosphatase family protein, expressed
LOC_Os09g36300Os.10132.1.S1_at11/119+20945436..20952440Lon protease homolog 1, mitochondrial precursor, putative, expressed
LOC_Os09g36310OsAffx.18010.1.S1_at10/119+20959121..20960632hypothetical protein
LOC_Os09g36320Os.17034.1.S1_at11/119+20961747..20967032serine/threonine-protein kinase NAK, putative, expressed
LOC_Os09g36330OsAffx.6492.1.S1_at11/119+20969412..20970433hypothetical protein
LOC_Os09g36340OsAffx.6493.1.S1_at10/119+20971299..20974745HVA22-like protein i, putative
LOC_Os09g36350Os.6247.1.S1_at11/119+20975968..20980170Glycosyl hydrolase family 9 protein, expressed
LOC_Os09g36360Os.16049.1.S1_at11/119+20983249..20985898expressed protein
LOC_Os09g36370OsAffx.30150.5.S1_s_at11/119+20987969..20993985ER lumen protein retaining receptor containing protein, expressed
LOC_Os09g36380OsAffx.18011.1.S1_at11/119+20994752..20995183hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6492.1.S1_at--540--3491Chr09:20969478..20969502 (25 bp)
CATGGCGCCGGAGACCTCGCTGAGA
LOC_Os09g36330
OsAffx.6492.1.S1_at--357--1511Chr09:20970197..20970221 (25 bp)
AGCAGCATCATGAAGAGCACTGGAG
LOC_Os09g36330
OsAffx.6492.1.S1_at--144--5751Chr09:20970230..20970254 (25 bp)
GACGGCGACGCCTCTGATGAAGAGA
LOC_Os09g36330
OsAffx.6492.1.S1_at--940--8851Chr09:20970244..20970268 (25 bp)
TGATGAAGAGAACCCGTCGTCGTTT
LOC_Os09g36330
OsAffx.6492.1.S1_at--601--8971Chr09:20970247..20970271 (25 bp)
TGAAGAGAACCCGTCGTCGTTTCTC
LOC_Os09g36330
OsAffx.6492.1.S1_at--358--4211Chr09:20970276..20970300 (25 bp)
CCGGTCAAACACACGGGCTGCAAGT
LOC_Os09g36330
OsAffx.6492.1.S1_at--696--2391Chr09:20970282..20970306 (25 bp)
AAACACACGGGCTGCAAGTCTGGAA
LOC_Os09g36330
OsAffx.6492.1.S1_at--901--2171Chr09:20970286..20970310 (25 bp)
ACACGGGCTGCAAGTCTGGAATGAT
LOC_Os09g36330
OsAffx.6492.1.S1_at--644--9011Chr09:20970294..20970318 (25 bp)
TGCAAGTCTGGAATGATGGAGAACC
LOC_Os09g36330
OsAffx.6492.1.S1_at--613--3031Chr09:20970332..20970356 (25 bp)
AATCCAACGCTCACGTGTGCGTCTG
LOC_Os09g36330
OsAffx.6492.1.S1_at--273--3751Chr09:20970341..20970365 (25 bp)
CTCACGTGTGCGTCTGTTAGGCTGT
LOC_Os09g36330
Target Sequence 
CATGGCGCCGGAGACCTCGCTGAGAGGCGGTGGCAGCGGAAGGAGGACAAGACGGCGATGAGAGGAGACAACAGCAGCAT
CATGAAGAGCACTGGAGGAGAAGAGGACGGCGACGCCTCTGATGAAGAGAACCCGTCGTCGTTTCTCCTCCCCGGTCAAA
CACACGGGCTGCAAGTCTGGAATGATGGAGAACCAAACAACCCGCTCAATCCAACGCTCACGTGTGCGTCTGTTAGGCTG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6492.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis