Browse Element(s) Details


OsAffx.6508.1.S1_at

Description tigr:9637.m03207
TID=OsAffx.6508.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3774010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g37690OsAffx.30175.1.S1_at11/119+21723858..21725671Flavin-binding monooxygenase-like family protein
LOC_Os09g37700Os.54373.1.S1_at11/119+21727331..21730490expressed protein
LOC_Os09g37710OsAffx.30176.1.S1_at11/119+21735043..21739460RWP-RK domain containing protein, expressed
LOC_Os09g37720OsAffx.18035.1.S1_at11/119+21742289..21743113RNA recognition motif, putative
LOC_Os09g37730OsAffx.6507.1.S1_at11/119+21744258..21745492expressed protein
LOC_Os09g37740OsAffx.6508.1.S1_at10/119+21745676..21746754hypothetical protein
LOC_Os09g37750OsAffx.18036.1.S1_at11/119+21747269..21747688hypothetical protein
LOC_Os09g37760Os.26925.1.S1_at11/119+21751269..21757050Bromodomain containing protein, expressed
LOC_Os09g37770OsAffx.6509.1.S1_at11/119+21759179..21759571hypothetical protein
LOC_Os09g37780OsAffx.30177.3.S1_at11/119+21761277..21764879D-mannose binding lectin family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6508.1.S1_at--691--831Chr09:21746652..21746676 (25 bp)
ATGGACGCCGCGATCACGTTCACGT
LOC_Os09g37740
OsAffx.6508.1.S1_at--907--5251Chr09:21746497..21746521 (25 bp)
GAATCGCCGATGGATCAATGCTCCT
LOC_Os09g37740
OsAffx.6508.1.S1_at--327--3011Chr09:21746481..21746505 (25 bp)
AATGCTCCTTTTGTCCGTACAGTTT
LOC_Os09g37740
OsAffx.6508.1.S1_at--105--10771Chr09:21746471..21746495 (25 bp)
TTGTCCGTACAGTTTCCGTTGCGAA
LOC_Os09g37740
OsAffx.6508.1.S1_at--219--6851Chr09:21746464..21746484 (21 bp)
GTTTCCGTTGCGAACTTGTATCTGT
LOC_Os09g37740
OsAffx.6508.1.S1_at--306--491NONE
ATCTGTGTTTTGTTCGATCGATGTC
NONE
OsAffx.6508.1.S1_at--218--6371Chr09:21746015..21746039 (25 bp)
GATCGCCAAGCGGTACGTGCTGCGC
LOC_Os09g37740
OsAffx.6508.1.S1_at--555--8791Chr09:21745989..21746013 (25 bp)
TGTTCATCTCGCTCAAGTACGTGAC
LOC_Os09g37740
OsAffx.6508.1.S1_at--831--7371Chr09:21745927..21745951 (25 bp)
GTGACCGCGTCCTCTGTGGAGAAGC
LOC_Os09g37740
OsAffx.6508.1.S1_at--1038--8111Chr09:21745814..21745838 (25 bp)
GGACGGCCTGGCACGTGAGCCCATA
LOC_Os09g37740
OsAffx.6508.1.S1_at--919--1431Chr09:21745749..21745773 (25 bp)
AGAACCGCACCAAGGTCTGGGCCAT
LOC_Os09g37740
Target Sequence 
ATGGACGCCGCGATCACGTTCACGTCGTTCCCGTTCAGCCCCGACGCCAGCAGCAGCCGCCGCCACTCCGGCGGCATTGC
TCCGGCCGCGAACGCCGCCTCGATCTCGCCGTCGACGACGTTGCTGCTGCTGGTGGTGCTCATCCTGCCGCCGCCGAATC
GCCGATGGATCAATGCTCCTTTTGTCCGTACAGTTTCCGTTGCGAACTTGTATCTGTGTTTTGTTCGATCGATGTCGATC
GCCAAGCGGTACGTGCTGCGCCTGTTCATCTCGCTCAAGTACGTGACGGCGAACGTGGTGGACCGCCAGAGCGGGCGCGT
CGTGGTGACCGCGTCCTCTGTGGAGAAGCCCCTCCGGGACGGGCTCGAGTGCGGCCGCACCTGCAACGCCAAGGCCGCCG
CTGCCGTCGGGGAGGTGCTCGCCATGCGCCTCAAGGTGGACGGCCTGGCACGTGAGCCCATACACGCTGACGCCACCAAG
GAGGTGGAGAAGAAGGGGTTCAAGAACCGCACCAAGGTCTGGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6508.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis