Browse Element(s) Details


OsAffx.6613.1.S1_at

Description tigr:9638.m00800
TID=OsAffx.6613.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g092708/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g09220NANA10+4745977..4752638retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09229NANA10+4757686..4758017NA
LOC_Os10g09240Os.46791.1.S1_at11/1110+4760573..4761233expressed protein
LOC_Os10g09250NANA10+4765503..4767693retrotransposon, putative, centromere-specific
LOC_Os10g09260OsAffx.25377.1.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.2.S1_x_at9/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.1.S1_at8/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.3.S1_s_at4/1110+4771647..4772183hypothetical protein
LOC_Os10g09260Os.24942.4.S1_x_at2/1110+4771647..4772183hypothetical protein
LOC_Os10g09260OsAffx.25377.3.S1_x_at1/1110+4771647..4772183hypothetical protein
LOC_Os10g09270OsAffx.6613.1.S1_at8/1110+4776471..4779892hypothetical protein
LOC_Os10g09280Os.46314.3.S1_at11/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.7362.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280Os.54774.1.S1_x_at2/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09280OsAffx.25367.1.S1_at1/1110+4782324..4788988transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g09290Os.40325.1.A1_at9/1110+4790787..4793391expressed protein
LOC_Os10g09290Os.49334.2.S1_at1/1110+4790787..4793391expressed protein
LOC_Os10g09300OsAffx.26189.1.A1_s_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09300Os.29747.1.S1_at2/1110+4794079..4795830retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g09310NANA10+4798368..4802291retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6613.1.S1_at--62--1172Chr10:4779788..4779812 (25 bp)
AGTAAAAGAGACGAAGACAGGGATT
LOC_Os10g09270
OsAffx.6613.1.S1_at--590--2192Chr10:4778478..4778579 (25 bp)
ACAACCCACGAAGAGTTATCTACAA
LOC_Os10g09270
OsAffx.6613.1.S1_at--13--2612Chr10:4778476..4778577 (25 bp)
AACCCACGAAGAGTTATCTACAACT
LOC_Os10g09270
OsAffx.6613.1.S1_at--188--3431NONE
CAGAGCTTTCGTTGGTCGTTGAGTC
NONE
OsAffx.6613.1.S1_at--706--1531NONE
AGCTTTCGTTGGTCGTTGAGTCCCT
NONE
OsAffx.6613.1.S1_at--924--10611NONE
TTCGTTGGTCGTTGAGTCCCTGCAA
NONE
OsAffx.6613.1.S1_at--979--8591Chr10:4776912..4777238 (25 bp)
TGGTCGTTGAGTCCCTGCAATTTTC
LOC_Os10g09270
OsAffx.6613.1.S1_at--716--8251Chr10:4776518..4776835 (25 bp)
GGCAGAAAGGCTATCTACAGCTCCA
LOC_Os10g09270
OsAffx.6613.1.S1_at--909--5571Chr10:4776514..4776536 (23 bp)
GAAAGGCTATCTACAGCTCCACAGA
LOC_Os10g09270
OsAffx.6613.1.S1_at--998--2931Chr10:4776512..4776536 (25 bp)
AAGGCTATCTACAGCTCCACAGATT
LOC_Os10g09270
OsAffx.6613.1.S1_at--935--8291Chr10:4776510..4776534 (25 bp)
GGCTATCTACAGCTCCACAGATTTG
LOC_Os10g09270
Target Sequence 
AGTAAAAGAGACGAAGACAGGGATTTTTATACAGGTTCGGGCCCCTTATCTGACAGGAATAAGGTTGATTTGCATCGGCA
AGATCAACAACCCACGAAGAGTTATCTACAACTCACCGAAAGATCAGGCCAACAACAGCCTTGAATCTCGAGTGAAACTC
AGGGTTCATCAGGTGGTATCAGAGCTTTCGTTGGTCGTTGAGTCCCTGCAATTTTCAAATTTACATTTGAGTCCCTATGA
CCTTACATTGAGGTCCTTGATTCAGTTTTTGTTGAAAAGAAATAGAGAAAAAGGCAGAAAGGCTATCTACAGCTCCACAG
ATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6613.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis