Browse Element(s) Details


OsAffx.6629.1.S1_at

Description tigr:9638.m00877
TID=OsAffx.6629.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1004011/11Cytochrome P450 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10020OsAffx.8423.1.S1_at9/1110+5201878..5203860hypothetical protein
LOC_Os10g10030OsAffx.30368.1.S1_at11/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.50043.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10030Os.57516.1.A1_at1/1110+5208318..5214752Protein kinase domain containing protein, expressed
LOC_Os10g10040OsAffx.6629.1.S1_at11/1110+5227474..5233312Cytochrome P450 family protein
LOC_Os10g10050OsAffx.30369.1.S1_at11/1110+5235877..5236083expressed protein
LOC_Os10g10050OsAffx.30369.1.S1_x_at11/1110+5235877..5236083expressed protein
LOC_Os10g10060OsAffx.20668.1.S1_at11/1110+5237005..5237548hypothetical protein
LOC_Os10g10080Os.22635.1.S1_s_at11/1110+5253084..5256529exostosin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6629.1.S1_at--1044--5251Chr10:5230103..5230127 (25 bp)
GAATGCCGTGTTGGACTTGCTCTTT
LOC_Os10g10040
OsAffx.6629.1.S1_at--389--2131Chr10:5230015..5230039 (25 bp)
ACAGATAATCCCGAAGCCTTGCAAG
LOC_Os10g10040
OsAffx.6629.1.S1_at--998--10331Chr10:5229201..5229225 (25 bp)
TTTAAGGCTGGCAAGCATCGCTCCA
LOC_Os10g10040
OsAffx.6629.1.S1_at--723--6511Chr10:5228755..5228779 (25 bp)
GATTTGTCCTTACACTGTTCACTTA
LOC_Os10g10040
OsAffx.6629.1.S1_at--303--3331Chr10:5228743..5228767 (25 bp)
CACTGTTCACTTAAACCCTGTGGTT
LOC_Os10g10040
OsAffx.6629.1.S1_at--234--7491Chr10:5228724..5228748 (25 bp)
GTGGTTTATAAGGACCCCAACACAT
LOC_Os10g10040
OsAffx.6629.1.S1_at--568--10851Chr10:5227904..5227928 (25 bp)
TTGGTGCTCATTTTGCCAAGCTGCA
LOC_Os10g10040
OsAffx.6629.1.S1_at--1107--9032Chr10:5227883..5227907 (25 bp)
TGCAGATGGCGGTTTTCCTCCACTG
LOC_Os10g10040
OsAffx.6629.1.S1_at--303--9191Chr10:5227559..5227884 (25 bp)
TGCCTAGTCACAAGTCCAGTTGGAA
LOC_Os10g10040
OsAffx.6629.1.S1_at--643--8191Chr10:5227521..5227545 (25 bp)
GGAAGAATGGCCCTTTCTCCTGGAC
LOC_Os10g10040
OsAffx.6629.1.S1_at--181--10591Chr10:5227507..5227531 (25 bp)
TTCTCCTGGACTACGATTTCCTGAA
LOC_Os10g10040
Target Sequence 
GAATGCCGTGTTGGACTTGCTCTTTTTGCTTCTATTTGCCAGCTTCGAAACCACATCATCCGGAATAACTGCAATGCTTA
TATTTTTGACAGATAATCCCGAAGCCTTGCAAGAACTAATAGAGGAGCATAATAACATTCGGAAGAGAAAGGCTGATAAG
AACTCCGAAATCACGTGGGAGGAATACAAGTCTATGAAATTCACATCTCATGTTATACATGAAGCTTTAAGGCTGGCAAG
CATCGCTCCAGTGATGTTTAGAGAAGCCATAGAGGATGTTCATATAAAAGGTTTTGCTATCCCAAAAGGATCAAAAATTA
TGATTTGTCCTTACACTGTTCACTTAAACCCTGTGGTTTATAAGGACCCCAACACATTCAATCCTTGGAGATGGAAGTGG
TGCCTCCAAGGATTTCATGGCCTTTGGAGGGGGGCTGCGCTTGTGTGTTGGTGCTCATTTTGCCAAGCTGCAGATGGCGG
TTTTCCTCCACTGCCTAGTCACAAGTCCAGTTGGAAAGCAATCAAAGGAGGAAGAATGGCCCTTTCTCCTGGACTACGAT
TTCCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6629.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis