Browse Element(s) Details


OsAffx.6747.1.S1_x_at

Description gb:NM_196192.1
DB_XREF= gi:37533743
TID=OsAffx.6747.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0019N10.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g240802/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24030OsAffx.18369.1.S1_at11/1110+11981065..11981416hypothetical protein
LOC_Os10g24040OsAffx.24242.2.S1_at11/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040Os.31929.11.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040OsAffx.24242.5.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24050OsAffx.30518.1.S1_at11/1110+11988785..11990321Ribosome inactivating protein
LOC_Os10g24060OsAffx.20421.1.S1_at11/1110+11993380..11994214hypothetical protein
LOC_Os10g24060OsAffx.15574.1.S1_at1/1110+11993380..11994214hypothetical protein
LOC_Os10g24070Os.14200.2.S1_x_at11/1110+11996060..12005435expressed protein
LOC_Os10g24070Os.14200.1.S1_at10/1110+11996060..12005435expressed protein
LOC_Os10g24080OsAffx.6747.2.S1_x_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.2.S1_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.1.S1_x_at2/1110+12006370..12007211hypothetical protein
LOC_Os10g24090NANA10+12011279..12011986hypothetical protein
LOC_Os10g24100OsAffx.20420.1.S1_at11/1110+12017946..12021917hypothetical protein
LOC_Os10g24100OsAffx.20423.2.S1_x_at1/1110+12017946..12021917hypothetical protein
LOC_Os10g24110Os.31497.2.S1_x_at1/1110+12024225..12026729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24120Os.51501.1.S2_x_at2/1110+12027371..12031452hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6747.1.S1_x_at--452--8231Chr10:12007157..12007181 (25 bp)
GGCAACCATGGCGTTGGGAGCTTAG
LOC_Os10g24080
OsAffx.6747.1.S1_x_at--1048--1551Chr10:12007139..12007163 (25 bp)
AGCTTAGGGATGAAGCAGCTCGACG
LOC_Os10g24080
OsAffx.6747.1.S1_x_at--767--5131NONE
GCAAAGCTCGATGGCGATGCTGCCC
NONE
OsAffx.6747.1.S1_x_at--654--6231NONE
GATGGCGATGCTGCCCGAGGCTGTC
NONE
OsAffx.6747.1.S1_x_at--610--3991Chr10:12006177..12006201 (25 bp)
CGTGGTCACCGCCATGAAAACTGCA
NONE
OsAffx.6747.1.S1_x_at--611--8591Chr10:12006175..12006199 (25 bp)
TGGTCACCGCCATGAAAACTGCACA
NONE
OsAffx.6747.1.S1_x_at--707--8971Chr10:12006163..12006187 (25 bp)
TGAAAACTGCACACAGAGCTACTGA
NONE
OsAffx.6747.1.S1_x_at--568--2551Chr10:12006159..12006183 (25 bp)
AACTGCACACAGAGCTACTGAGTAC
NONE
OsAffx.6747.1.S1_x_at--580--5111Chr10:12006155..12006179 (25 bp)
GCACACAGAGCTACTGAGTACGCCG
NONE
OsAffx.6747.1.S1_x_at--887--2131Chr10:12006151..12006175 (25 bp)
ACAGAGCTACTGAGTACGCCGCCGC
NONE
OsAffx.6747.1.S1_x_at--275--1371Chr10:12006149..12006173 (25 bp)
AGAGCTACTGAGTACGCCGCCGCTG
NONE
Target Sequence 
GGCAACCATGGCGTTGGGAGCTTAGGGATGAAGCAGCTCGACGGGGCAAAGCTCGATGGCGATGCTGCCCGAGGCTGTCG
CGCCGTGGTCACCGCCATGAAAACTGCACACAGAGCTACTGAGTACGCCGCCGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6747.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis