Browse Element(s) Details


OsAffx.6747.2.S1_x_at

Description tigr:9638.m02013
TID=OsAffx.6747.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g240808/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g24030OsAffx.18369.1.S1_at11/1110+11981065..11981416hypothetical protein
LOC_Os10g24040OsAffx.24242.2.S1_at11/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040Os.31929.11.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24040OsAffx.24242.5.S1_x_at1/1110+11985464..11986533transposon protein, putative, Pong sub-class
LOC_Os10g24050OsAffx.30518.1.S1_at11/1110+11988785..11990321Ribosome inactivating protein
LOC_Os10g24060OsAffx.20421.1.S1_at11/1110+11993380..11994214hypothetical protein
LOC_Os10g24060OsAffx.15574.1.S1_at1/1110+11993380..11994214hypothetical protein
LOC_Os10g24070Os.14200.2.S1_x_at11/1110+11996060..12005435expressed protein
LOC_Os10g24070Os.14200.1.S1_at10/1110+11996060..12005435expressed protein
LOC_Os10g24080OsAffx.6747.2.S1_x_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.2.S1_at8/1110+12006370..12007211hypothetical protein
LOC_Os10g24080OsAffx.6747.1.S1_x_at2/1110+12006370..12007211hypothetical protein
LOC_Os10g24090NANA10+12011279..12011986hypothetical protein
LOC_Os10g24100OsAffx.20420.1.S1_at11/1110+12017946..12021917hypothetical protein
LOC_Os10g24100OsAffx.20423.2.S1_x_at1/1110+12017946..12021917hypothetical protein
LOC_Os10g24110Os.31497.2.S1_x_at1/1110+12024225..12026729retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g24120Os.51501.1.S2_x_at2/1110+12027371..12031452hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6747.2.S1_x_at--1047--1551Chr10:12007139..12007163 (25 bp)
AGCTTAGGGATGAAGCAGCTCGACG
LOC_Os10g24080
OsAffx.6747.2.S1_x_at--435--871NONE
ATGGCGATGGCCTGTTTGTTACTAC
NONE
OsAffx.6747.2.S1_x_at--741--8471NONE
TGGCGATGGCCTGTTTGTTACTACC
NONE
OsAffx.6747.2.S1_x_at--159--871NONE
ATGGCCTGTTTGTTACTACCCTGAG
NONE
OsAffx.6747.2.S1_x_at--804--8451Chr10:12006412..12006435 (24 bp)
TGGCCTGTTTGTTACTACCCTGAGA
LOC_Os10g24080
OsAffx.6747.2.S1_x_at--891--8412Chr02:8060203..8060291 (24 bp)
GGCCTGTTTGTTACTACCCTGAGAA
NONE
OsAffx.6747.2.S1_x_at--638--4471Chr10:12006410..12006434 (25 bp)
GCCTGTTTGTTACTACCCTGAGAAA
LOC_Os10g24080
OsAffx.6747.2.S1_x_at--1111--8751Chr10:12006407..12006431 (25 bp)
TGTTTGTTACTACCCTGAGAAAAAG
LOC_Os10g24080
OsAffx.6747.2.S1_x_at--75--7051Chr10:12006403..12006427 (25 bp)
TGTTACTACCCTGAGAAAAAGTCGT
LOC_Os10g24080
OsAffx.6747.2.S1_x_at--366--10451Chr10:12006401..12006425 (25 bp)
TTACTACCCTGAGAAAAAGTCGTCT
LOC_Os10g24080
OsAffx.6747.2.S1_x_at--1000--9891Chr10:12006400..12006424 (25 bp)
TACTACCCTGAGAAAAAGTCGTCTG
LOC_Os10g24080
Target Sequence 
AGCTTAGGGATGAAGCAGCTCGACGGGGCAAAGCTCGATGGCGATGGCCTGTTTGTTACTACCCTGAGAAAAAGTCGTCT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6747.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis