Browse Element(s) Details


OsAffx.6772.1.S1_at

Description tigr:9638.m02262
TID=OsAffx.6772.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2651011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26490OsAffx.23523.1.S1_at11/1110+13458065..13461532hypothetical protein
LOC_Os10g26490Os.45422.1.S1_x_at2/1110+13458065..13461532hypothetical protein
LOC_Os10g26500OsAffx.18415.1.S1_x_at11/1110+13473516..13474789HAHB-1, putative
LOC_Os10g26510OsAffx.6772.1.S1_at11/1110+13480599..13482092hypothetical protein
LOC_Os10g26510Os.16463.1.S1_at2/1110+13480599..13482092hypothetical protein
LOC_Os10g26520Os.15059.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26520Os.18446.1.S1_at11/1110+13492274..13497972serine/threonine-protein kinase NAK, putative, expressed
LOC_Os10g26530OsAffx.20358.1.S1_at11/1110+13499491..13500190hypothetical protein
LOC_Os10g26540OsAffx.6774.1.S1_x_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_at11/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.1.S1_at8/1110+13501910..13504824expressed protein
LOC_Os10g26540Os.46536.2.S1_x_at4/1110+13501910..13504824expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6772.1.S1_at--752--5132Chr05:17112195..17112219 (25 bp)
GCAAAGTTTGTTGGTCGATCTGTGA
NONE
OsAffx.6772.1.S1_at--640--4052Chr05:17112210..17112720 (25 bp)
CGATCTGTGACGTCTGGGTTAGATG
NONE
OsAffx.6772.1.S1_at--401--6331Chr10:13481120..13481144 (25 bp)
GATGCAAGCATGGTTTCAGTGATAG
LOC_Os10g26510
OsAffx.6772.1.S1_at--357--7412Chr05:17112252..17112276 (25 bp)
GTGATAGATCGTGCGTTTTCTGCTT
NONE
OsAffx.6772.1.S1_at--63--7312Chr05:17112262..17112286 (25 bp)
GTGCGTTTTCTGCTTGGCAAGACGA
NONE
OsAffx.6772.1.S1_at--1080--9832Chr05:17112290..17112314 (25 bp)
TAAATTCGGGTTGGTGGCCAGGCAA
NONE
OsAffx.6772.1.S1_at--858--4251Chr10:13480986..13481010 (25 bp)
CCGGGAGCGCCAAGTCCATCTGTTC
LOC_Os10g26510
OsAffx.6772.1.S1_at--142--5892Chr05:28612957..28613206 (25 bp)
GAGCGGCCCCGAAGTCGAACTTGTG
NONE
OsAffx.6772.1.S1_at--594--5333Chr05:28613192..28613216 (25 bp)
GAAGTCGAACTTGTGCAGCGCCGCA
NONE
OsAffx.6772.1.S1_at--178--4171Chr10:13480701..13480725 (25 bp)
CGCCGGACGGCTTGGACAGACAAGA
LOC_Os10g26510
OsAffx.6772.1.S1_at--55--10252Chr05:17112722..17112742 (21 bp)
TTTGGCAACCTGACATGTGGGAGTT
NONE
Target Sequence 
GCAAAGTTTGTTGGTCGATCTGTGACGTCTGGGTTAGATGATGCAAGCATGGTTTCAGTGATAGATCGTGCGTTTTCTGC
TTGGCAAGACGAGAGTAAATTCGGGTTGGTGGCCAGGCAAGATCCGCCGCCTCGAGGGCCCATGGCTCTTCTCCTTCGCC
GGCGCGGCGCGCCCCGGGAGCGCCAAGTCCATCTGTTCCGAGCTCATCGCTGGCTTCGGCGGCGGCGCGGCAACCGTCGA
CGTGCTCGGATTCGGCAGCGGCTGCGGAGGAGGAAGCGCCGTGTGGGGAGCGGGCGAGCGGCCCCGAAGTCGAACTTGTG
CAGCGCCGCACTCGTCCATGCCGCGAAGCGGGCCCTCCTCTGCCTCCCCACTGCGGCGCCCGCCGGCGCCGGCGCCGGCC
GCCGTCGCGGCGCTGCGCTCCTCCTCTTCCGCCTTGCCCCGACGGCCTCCTCCCCAGCCGCCGGACGGCTTGGACAGACA
AGAGGAGAAGAGAAGAGAGAGAGAGAGGAGGAAGGGAGAGAGATGATTTGGCAACCTGACATGTGGGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6772.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis