Browse Element(s) Details


OsAffx.6798.2.A1_at

Description tigr:9638.m02416
TID=OsAffx.6798.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2849011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g28440Os.46851.1.S1_x_at11/1110+14468747..14470955Sulfate transporter 3.1, putative, expressed
LOC_Os10g28450OsAffx.30572.1.S1_at11/1110+14473297..14475240CAF1 family ribonuclease containing protein
LOC_Os10g28460Os.28943.1.S1_x_at2/1110+14478938..14482178retrotransposon protein, putative, unclassified
LOC_Os10g28470NANA10+14482798..14488760retrotransposon protein, putative, unclassified
LOC_Os10g28480NANA10+14491475..14492195hypothetical protein
LOC_Os10g28490OsAffx.6798.2.A1_at11/1110+14493236..14493959expressed protein
LOC_Os10g28510Os.52300.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.30573.1.S1_at11/1110+14502067..14509951expressed protein
LOC_Os10g28510OsAffx.1264.1.S1_x_at1/1110+14502067..14509951expressed protein
LOC_Os10g28520OsAffx.30574.1.S1_at11/1110+14510568..14512810CAF1 family ribonuclease containing protein
LOC_Os10g28520OsAffx.30576.2.S1_x_at1/1110+14510568..14512810CAF1 family ribonuclease containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6798.2.A1_at--788--3112Chr10:14542338..14542368 (25 bp)
AATATTGTCCCTTCCAAACCAGGAT
NONE
OsAffx.6798.2.A1_at--875--372Chr10:14542388..14542412 (25 bp)
ATCAAATTCTTTAGCCTACTGCCTG
NONE
OsAffx.6798.2.A1_at--671--9912Chr10:14542404..14542426 (23 bp)
TACTGCCTGCTAAACTCCTTTTTAT
NONE
OsAffx.6798.2.A1_at--309--3671Chr10:14493702..14493726 (25 bp)
CTTTTTATCCGGAATGGCTGTCCTA
LOC_Os10g28490
OsAffx.6798.2.A1_at--538--8332Chr10:14542439..14542462 (24 bp)
GGCTGTCCTAGGAGAGACCATCCAA
NONE
OsAffx.6798.2.A1_at--1155--6591Chr10:14493653..14493677 (25 bp)
GATTGTCTAGCGCTAAACTCCTCAA
LOC_Os10g28490
OsAffx.6798.2.A1_at--251--9751Chr10:14493577..14493601 (25 bp)
TAATTAATTCTTCCGACACAGCCAT
LOC_Os10g28490
OsAffx.6798.2.A1_at--608--871Chr10:14493550..14493574 (25 bp)
ATGGCGCTGGATCTGCATCTTGTTT
LOC_Os10g28490
OsAffx.6798.2.A1_at--1131--3791Chr10:14493521..14493545 (25 bp)
CTCGCCCTGTGTTTTGCACATAACA
LOC_Os10g28490
OsAffx.6798.2.A1_at--1153--9811Chr10:14493501..14493525 (25 bp)
TAACACTTGCTGCTGGTAGAACAAC
LOC_Os10g28490
OsAffx.6798.2.A1_at--744--1552Chr10:14542718..14542739 (22 bp)
AGCTGACCTGGAACCCTTGGCGATG
NONE
Target Sequence 
AATATTGTCCCTTCCAAACCAGGATCACATTTTGGAGAGTTTGCATCAAATTCTTTAGCCTACTGCCTGCTAAACTCCTT
TTTATCCGGAATGGCTGTCCTAGGAGAGACCATCCAATGGTATTAAGATTGTCTAGCGCTAAACTCCTCAATTTAACCAA
GATTAATTCGGTTTGCTTGGGAAGATTTATCCAAACCAGGATTAATTAATTCTTCCGACACAGCCATCGATGGCGCTGGA
TCTGCATCTTGTTTGCTCCTCGCCCTGTGTTTTGCACATAACACTTGCTGCTGGTAGAACAACAAGAACTCATGGCGGAA
AGAATCAGAGGACCGAGGAAGAAGAGGGGAAGGAGGAGACTGGAAAAGCTGACCTGGAACCCTTGGCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6798.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis