Browse Element(s) Details


OsAffx.6874.1.S1_at

Description tigr:9638.m03125
TID=OsAffx.6874.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3534011/11hypothetical protein
LOC_Os10g351101/11Alpha-galactosidase precursor, putative, expressed
LOC_Os08g405601/11C2H2 zinc-finger protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35290Os.46652.1.S1_at11/1110+18528183..18538046DNA-directed RNA polymerase, beta subunit family protein, expressed
LOC_Os10g35294NANA10+18540336..18543271fiber protein Fb34, putative, expressed
LOC_Os10g35300Os.55986.1.S1_x_at11/1110+18543925..18545407Dof domain, zinc finger family protein, expressed
LOC_Os10g35310OsAffx.18524.1.S1_at6/1110+18552246..18553009expressed protein
LOC_Os10g35320OsAffx.18284.2.S1_x_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35320OsAffx.18284.2.S1_at11/1110+18553777..18554454hypothetical protein
LOC_Os10g35330OsAffx.30679.1.S1_at11/1110+18555866..18559122hypothetical protein
LOC_Os10g35330OsAffx.30679.2.S1_x_at2/1110+18555866..18559122hypothetical protein
LOC_Os10g35340OsAffx.6874.1.S1_at11/1110+18560871..18562227hypothetical protein
LOC_Os10g35350OsAffx.13097.1.S1_s_at11/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35350Os.46613.1.S2_at4/1110+18563737..18567735transposon protein, putative, Mutator sub-class
LOC_Os10g35360OsAffx.7995.1.S1_x_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35360OsAffx.7995.1.S1_at11/1110+18568978..18569400hypothetical protein
LOC_Os10g35370Os.9230.1.S1_x_at11/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35370Os.46805.2.S1_x_at1/1110+18570695..18574407Protochlorophyllide reductase B, chloroplast precursor, putative, expressed
LOC_Os10g35380Os.46651.1.S1_at11/1110+18576917..18585701expressed protein
LOC_Os10g35380Os.46550.2.S1_x_at2/1110+18576917..18585701expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016568biological_processchromatin modification
GO:0045449biological_processregulation of transcription
GO:0048367biological_processshoot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0004557molecular_functionalpha-galactosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6874.1.S1_at--413--671Chr10:18561069..18561090 (22 bp)
ATGAGACCAGAACGTCCTACGAATG
LOC_Os10g35340
OsAffx.6874.1.S1_at--368--5851Chr10:18561065..18561089 (25 bp)
GACCAGAACGTCCTACGAATGTGCT
LOC_Os10g35340
OsAffx.6874.1.S1_at--927--5451Chr10:18561060..18561084 (25 bp)
GAACGTCCTACGAATGTGCTGCCTA
LOC_Os10g35340
OsAffx.6874.1.S1_at--749--7251Chr10:18561056..18561080 (25 bp)
GTCCTACGAATGTGCTGCCTATGGT
LOC_Os10g35340
OsAffx.6874.1.S1_at--282--9951Chr10:18561052..18561076 (25 bp)
TACGAATGTGCTGCCTATGGTGGAC
LOC_Os10g35340
OsAffx.6874.1.S1_at--1119--5271Chr10:18561049..18561073 (25 bp)
GAATGTGCTGCCTATGGTGGACCTG
LOC_Os10g35340
OsAffx.6874.1.S1_at--648--7732Chr10:18560934..18561049 (25 bp)
GGTGGATGGAATGAGCTCACACAAT
LOC_Os10g35340
OsAffx.6874.1.S1_at--914--5271Chr10:18560926..18560946 (21 bp)
GAATGAGCTCACACAATTTCTGTCA
LOC_Os10g35340
OsAffx.6874.1.S1_at--744--8911Chr10:18560923..18560946 (24 bp)
TGAGCTCACACAATTTCTGTCAATT
LOC_Os10g35340
OsAffx.6874.1.S1_at--145--3132Chr10:18410950..18410974 (25 bp)
AATTTCTGTCAATTGTGCAGCACTC
LOC_Os10g35110
OsAffx.6874.1.S1_at--635--10311Chr10:18560910..18560934 (25 bp)
TTTCTGTCAATTGTGCAGCACTCGT
LOC_Os10g35340
Target Sequence 
ATGAGACCAGAACGTCCTACGAATGTGCTGCCTATGGTGGACCTGGTGGATGGAATGAGCTCACACAATTTCTGTCAATT
GTGCAGCACTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis