Browse Element(s) Details


OsAffx.6927.1.S1_at

Description tigr:9638.m03692
TID=OsAffx.6927.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g276201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27560Os.7246.1.S1_s_at11/116+15600605..15602930HGA1, putative, expressed
LOC_Os06g27560Os.7246.2.S1_s_at10/116+15600605..15602930HGA1, putative, expressed
LOC_Os06g27570NANA6+15605249..15605884hypothetical protein
LOC_Os06g27580NANA6+15607455..15610167retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27590OsAffx.15629.1.S1_at5/116+15610977..15611819expressed protein
LOC_Os06g27600NANA6+15617541..15619052retrotransposon protein, putative, unclassified
LOC_Os06g27610OsAffx.18868.4.S1_at11/116+15620655..15623546hypothetical protein
LOC_Os06g27610OsAffx.18868.5.S1_x_at1/116+15620655..15623546hypothetical protein
LOC_Os06g27610Os.50767.1.S1_x_at1/116+15620655..15623546hypothetical protein
LOC_Os06g27620OsAffx.27837.1.S1_at11/116+15626840..15627547hypothetical protein
LOC_Os06g27620OsAffx.6927.1.S1_at1/116+15626840..15627547hypothetical protein
LOC_Os06g27630NANA6+15628986..15630821hypothetical protein
LOC_Os06g27640NANA6+15642730..15644362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27650Os.53553.1.S1_at11/116+15647700..15658327Uncharacterized ACR, COG2135 family protein, expressed
LOC_Os06g27650Os.39422.1.S1_at11/116+15647700..15658327Uncharacterized ACR, COG2135 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6927.1.S1_at--846--211Chr10:21490022..21490046 (25 bp)
ATTTGGCGGAGATCGCGTTGTTGGA
NONE
OsAffx.6927.1.S1_at--515--5592Chr10:21489985..21490009 (25 bp)
GAAATCGCGGCAATACTGGCGGCAT
NONE
OsAffx.6927.1.S1_at--941--3091Chr10:21489974..21489998 (25 bp)
AATACTGGCGGCATGGATGCGAAGT
NONE
OsAffx.6927.1.S1_at--683--4551Chr10:21489905..21489927 (23 bp)
GCGCGCCTCCAGTGCCATCGGATTG
NONE
OsAffx.6927.1.S1_at--695--3451NONE
CAGTGCCATCGGATTGCCAGACAAA
NONE
OsAffx.6927.1.S1_at--838--9431NONE
TCGGATTGCCAGACAAACTTCGTTG
NONE
OsAffx.6927.1.S1_at--841--2391Chr10:21488790..21488814 (25 bp)
AAACTTCGTTGGTGCTTATCTTGTG
NONE
OsAffx.6927.1.S1_at--703--9391Chr10:21488785..21488809 (25 bp)
TCGTTGGTGCTTATCTTGTGGCTAA
NONE
OsAffx.6927.1.S1_at--733--7311Chr10:21488779..21488803 (25 bp)
GTGCTTATCTTGTGGCTAAGAACAA
NONE
OsAffx.6927.1.S1_at--231--5511Chr10:21488760..21488784 (25 bp)
GAACAACATTAAGTTTATTCAGGTT
NONE
OsAffx.6927.1.S1_at--480--112Chr09:22448006..22448033 (23 bp)
ATTCAGGTTGATTATATGCATGTGG
NONE
Target Sequence 
ATTTGGCGGAGATCGCGTTGTTGGAGGGGATGGGGAGGAAATCGCGGCAATACTGGCGGCATGGATGCGAAGTGGGAGAG
AAGAAGGTGTGGGACAAGAGGATCTGGGAGGGAGGAGAGGCGCGCCTCCAGTGCCATCGGATTGCCAGACAAACTTCGTT
GGTGCTTATCTTGTGGCTAAGAACAACATTAAGTTTATTCAGGTTGATTATATGCATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis