Browse Element(s) Details


OsAffx.6978.1.S1_at

Description tigr:9639.m00221
TID=OsAffx.6978.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0314011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03100Os.31312.5.S1_x_at3/1111+1105467..1108768retrotransposon protein, putative, unclassified
LOC_Os11g03100Os.31312.2.S1_x_at3/1111+1105467..1108768retrotransposon protein, putative, unclassified
LOC_Os11g03110Os.47623.1.A1_at11/1111+1118747..1122351GRAS family transcription factor containing protein, expressed
LOC_Os11g03120OsAffx.18646.1.S1_at11/1111+1125514..1126413hypothetical protein
LOC_Os11g03130OsAffx.19459.1.S1_at11/1111+1127569..1129824hypothetical protein
LOC_Os11g03140OsAffx.6978.1.S1_at11/1111+1130699..1131363hypothetical protein
LOC_Os11g03150OsAffx.18648.1.S1_at11/1111+1132890..1133960hypothetical protein
LOC_Os11g03160Os.24025.1.S1_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.24025.1.S1_s_at11/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03160Os.57150.1.S1_at4/1111+1135059..1140412Glycosyl transferase family 8 protein, expressed
LOC_Os11g03170NANA11+1148403..1149619hypothetical protein
LOC_Os11g03180OsAffx.18650.1.S1_at9/1111+1153273..1155157hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6978.1.S1_at--227--3411Chr11:1131258..1131282 (25 bp)
CAGCAGCCGGAGTACATGAGTAGTG
LOC_Os11g03140
OsAffx.6978.1.S1_at--884--8432Chr12:1054723..1054765 (25 bp)
GGCCAGCCAAGCAGCAGAAACCGGG
NONE
OsAffx.6978.1.S1_at--838--7572Chr12:1054694..1054718 (25 bp)
GGGCGTGGCAGATGAATATCAAACA
NONE
OsAffx.6978.1.S1_at--5--6332Chr12:1054689..1054708 (20 bp)
GATGAATATCAAACACGACGAGGTG
NONE
OsAffx.6978.1.S1_at--1099--10831Chr11:1131137..1131161 (25 bp)
TTGGCGTTCCCATCAGTTCACAGCC
LOC_Os11g03140
OsAffx.6978.1.S1_at--639--3691Chr11:1131110..1131134 (25 bp)
CTACGCTGCGTCCTCAAAATTTTAT
LOC_Os11g03140
OsAffx.6978.1.S1_at--346--10411Chr11:1131089..1131113 (25 bp)
TTATGAGGTTTTGCGCTACCTGCAA
LOC_Os11g03140
OsAffx.6978.1.S1_at--785--1011Chr11:1131084..1131108 (25 bp)
AGGTTTTGCGCTACCTGCAACCGCA
LOC_Os11g03140
OsAffx.6978.1.S1_at--1117--2612Chr12:1054572..1054596 (25 bp)
AACCGCACACTTAGTCCACAGATGA
NONE
OsAffx.6978.1.S1_at--577--10432Chr12:1054562..1054586 (25 bp)
TTAGTCCACAGATGAACGTCTACAT
NONE
OsAffx.6978.1.S1_at--769--5431Chr11:1130756..1131067 (25 bp)
GAACGTCTACATCTTCAGAAAAAGA
LOC_Os11g03140
Target Sequence 
CAGCAGCCGGAGTACATGAGTAGTGAGCAGGTGAGGACGAGGAGAGGCCAGCCAAGCAGCAGAAACCGGGGCGTGGGCGT
GGCAGATGAATATCAAACACGACGAGGTGTTGATGATAATGTTGGCGTTCCCATCAGTTCACAGCCCCCTACGCTGCGTC
CTCAAAATTTTATGAGGTTTTGCGCTACCTGCAACCGCACACTTAGTCCACAGATGAACGTCTACATCTTCAGAAAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis