Browse Element(s) Details


OsAffx.6990.1.S1_at

Description tigr:9639.m00339
TID=OsAffx.6990.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0427410/11hypothetical protein
LOC_Os11g042709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g04240Os.48585.1.S1_at11/1111+1743100..1747825transcription initiation factor IIE, alpha subunit, putative, expressed
LOC_Os11g04280OsAffx.30811.2.S1_at11/1111+1751235..1751891Zinc finger, C3HC4 type family protein
LOC_Os11g04270OsAffx.6990.1.S1_at9/1111+1752627..1754453hypothetical protein
LOC_Os11g04260OsAffx.6989.1.S1_at11/1111+1755947..1757800hypothetical protein
LOC_Os11g04267OsAffx.6989.1.S1_at11/1111+1767459..1769312hypothetical protein
LOC_Os11g04274OsAffx.6990.1.S1_at10/1111+1770806..1772632hypothetical protein
LOC_Os11g04281OsAffx.30811.2.S1_at11/1111+1773368..1774024Zinc finger, C3HC4 type family protein
LOC_Os11g04290Os.54318.1.S1_at11/1111+1774408..1776334Cytochrome P450 family protein, expressed
LOC_Os11g04300Os.46781.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.6654.1.S1_at2/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.51841.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.24379.1.S1_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300OsAffx.10222.1.S1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04300Os.45902.1.A1_x_at1/1111+1780699..1791875phosphoglycerate mutase family protein, expressed
LOC_Os11g04310NANA11+1794376..1795923Cytochrome P450 family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6990.1.S1_at--894--7751Chr11:1771923..1772240 (25 bp)
GGTGCAGATCAACCGATTAGCTGAG
LOC_Os11g04274
OsAffx.6990.1.S1_at--806--2031NONE
ACTTATCAGTGGCAGGAGTTCTTGC
NONE
OsAffx.6990.1.S1_at--421--6072Chr11:1754156..1754180 (25 bp)
GAGTTCTTGCCAATTGATGCTGAAG
LOC_Os11g04270
OsAffx.6990.1.S1_at--55--2912Chr11:1754194..1754218 (25 bp)
AAGGATCCACAAGAGGCCAGTCGAT
LOC_Os11g04270
OsAffx.6990.1.S1_at--728--6272Chr11:1754219..1754243 (25 bp)
GATGTAGTGGCATGGCATTTTGAGA
LOC_Os11g04270
OsAffx.6990.1.S1_at--391--7632Chr11:1754293..1754317 (25 bp)
GGGACAGACCTTCCTACAAATATAA
LOC_Os11g04270
OsAffx.6990.1.S1_at--339--32Chr11:1754317..1754341 (25 bp)
ATTGGCAAGCTGAGGTACCACCGAA
LOC_Os11g04270
OsAffx.6990.1.S1_at--830--3132Chr11:1754348..1754372 (25 bp)
AATTTTGCATGGAGGTTGGCTTGTG
LOC_Os11g04270
OsAffx.6990.1.S1_at--81--6172Chr11:1754359..1754383 (25 bp)
GAGGTTGGCTTGTGATGAACACCGT
LOC_Os11g04270
OsAffx.6990.1.S1_at--1030--2152Chr11:1754377..1754401 (25 bp)
ACACCGTGGCTACTAATACTTTCTC
LOC_Os11g04270
OsAffx.6990.1.S1_at--835--3092Chr11:1754391..1754415 (25 bp)
AATACTTTCTCTGGCAGTGTTATGG
LOC_Os11g04270
Target Sequence 
GGTGCAGATCAACCGATTAGCTGAGGAGTGGAAGGTAACTTATCAGTGGCAGGAGTTCTTGCCAATTGATGCTGAAGAAA
TTCTTAAGATAAGGATCCACAAGAGGCCAGTCGATGATGTAGTGGCATGGCATTTTGAGAAAACAGTTAGTAGTTTAAGA
AGGGACAGACCTTCCTACAAATATAATTGGCAAGCTGAGGTACCACCGAAGGTTAAAATTTTGCATGGAGGTTGGCTTGT
GATGAACACCGTGGCTACTAATACTTTCTCTGGCAGTGTTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis