Browse Element(s) Details


OsAffx.707.1.S1_at

Description gb:NM_193382.1
DB_XREF= gi:34913847
GEN=B1156H12.6
TID=OsAffx.707.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1156H12.6 (B1156H12.6), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g235502/11hypothetical protein
LOC_Os05g235402/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g23520OsAffx.26983.1.S1_at11/115+13392902..13393441hypothetical protein
LOC_Os05g23530Os.6997.1.S1_at11/115+13397739..13404981expressed protein
LOC_Os05g23530Os.6997.2.S1_at11/115+13397739..13404981expressed protein
LOC_Os05g23540OsAffx.4404.1.S1_at10/115+13408299..13411513hypothetical protein
LOC_Os05g23540OsAffx.707.1.S1_at2/115+13408299..13411513hypothetical protein
LOC_Os05g23550OsAffx.4404.1.S1_at10/115+13417374..13422690hypothetical protein
LOC_Os05g23550OsAffx.707.1.S1_at2/115+13417374..13422690hypothetical protein
LOC_Os05g23560OsAffx.14789.1.S1_at10/115+13433843..13434206hypothetical protein
LOC_Os05g23570OsAffx.12420.1.S1_at1/115+13439065..13439730hypothetical protein
LOC_Os05g23580OsAffx.26984.1.S1_at11/115+13441429..13443084hypothetical protein
LOC_Os05g23590OsAffx.14790.1.S1_at11/115+13445697..13450277retrotransposon, putative, centromere-specific
LOC_Os05g23590OsAffx.25367.1.S1_at1/115+13445697..13450277retrotransposon, putative, centromere-specific

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.707.1.S1_at--621--8371Chr01:20836841..20836864 (24 bp)
GGCGACCCAAGAAGGCCTTTCCAGC
NONE
OsAffx.707.1.S1_at--91--9513Chr10:5199971..5200418 (25 bp)
TCTCCCCTAGTCTGCCAAGCTGAGT
NONE
OsAffx.707.1.S1_at--222--1151Chr01:20834305..20834329 (25 bp)
AGTCTGCCAAGCTGAGTTCGGCCTA
NONE
OsAffx.707.1.S1_at--56--6071Chr01:20834292..20834316 (25 bp)
GAGTTCGGCCTACGGCTCTATGATA
NONE
OsAffx.707.1.S1_at--725--8432Chr04:12156896..12156920 (25 bp)
GGCCTACGGCTCTATGATATACTTG
NONE
OsAffx.707.1.S1_at--1104--1931Chr01:20834281..20834305 (25 bp)
ACGGCTCTATGATATACTTGGATGT
NONE
OsAffx.707.1.S1_at--286--332Chr11:26955005..26955024 (20 bp)
ATACTTGGATGTGGAGGGATACAAA
NONE
OsAffx.707.1.S1_at--217--6451Chr01:20834116..20834219 (25 bp)
GATCACATCAAACGAAGAATCCTAG
NONE
OsAffx.707.1.S1_at--726--2371Chr01:20834107..20834210 (25 bp)
AAACGAAGAATCCTAGTACTAGAGC
NONE
OsAffx.707.1.S1_at--1031--5934Chr12:14870278..14870302 (25 bp)
GAGCACTTAATAATTCAACTAAGCG
NONE
OsAffx.707.1.S1_at--809--10494Chr05:13419899..13419922 (24 bp)
TTCAACTAAGCGACGAACCCGCAAT
LOC_Os05g23550
Target Sequence 
GGCGACCCAAGAAGGCCTTTCCAGCTCTCCCCTAGTCTGCCAAGCTGAGTTCGGCCTACGGCTCTATGATATACTTGGAT
GTGGAGGGATACAAAGGACGGACAAGGCTGTTACCACCTGCCGCCTACCTCACTTTCCGTGGGGATCACATCAAACGAAG
AATCCTAGTACTAGAGCACTTAATAATTCAACTAAGCGACGAACCCGCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.707.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis