Browse Element(s) Details


OsAffx.7138.1.S1_at

Description tigr:9639.m01668
TID=OsAffx.7138.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative nitrate transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g181108/11POT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g18080OsAffx.31892.1.S1_x_at5/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.31892.5.S1_x_at3/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.31892.5.S1_at2/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18080OsAffx.6363.1.S1_at2/1111+10143068..10148047retrotransposon, putative, centromere-specific
LOC_Os11g18100OsAffx.31036.1.S1_at9/1111+10159517..10161186hypothetical protein
LOC_Os11g18110OsAffx.7138.1.S1_at8/1111+10163142..10169710POT family protein
LOC_Os11g18120OsAffx.29410.1.S1_at9/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.13325.1.S1_at2/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.10155.1.S1_at1/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18120OsAffx.10155.1.S1_x_at1/1111+10174071..10181459retrotransposon protein, putative, LINE subclass
LOC_Os11g18130OsAffx.18913.1.S1_at11/1111+10182071..10183029hypothetical protein
LOC_Os11g18140OsAffx.7139.1.S1_at11/1111+10185095..10193589carboxyl-terminal proteinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005509molecular_functioncalcium ion binding
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7138.1.S1_at--557--9671Chr11:10169469..10169493 (25 bp)
TCACCAACCGTGTCACCCGAAGAGG
LOC_Os11g18110
OsAffx.7138.1.S1_at--1110--6611Chr11:10169480..10169504 (25 bp)
GTCACCCGAAGAGGCGGTAAAGGCA
LOC_Os11g18110
OsAffx.7138.1.S1_at--665--10751Chr11:10169540..10169564 (25 bp)
TTGAACAATGGCAAGCTCGAGAGGT
LOC_Os11g18110
OsAffx.7138.1.S1_at--237--2691Chr11:10169552..10169576 (25 bp)
AAGCTCGAGAGGTTCTACGTCGTCC
LOC_Os11g18110
OsAffx.7138.1.S1_at--1034--3531Chr11:10169584..10169608 (25 bp)
CATCGAGGTGGTGGCACTGCTGTCC
LOC_Os11g18110
OsAffx.7138.1.S1_at--125--8631Chr11:10169592..10169616 (25 bp)
TGGTGGCACTGCTGTCCTACGTATT
LOC_Os11g18110
OsAffx.7138.1.S1_at--100--8711Chr11:10169604..10169628 (25 bp)
TGTCCTACGTATTCTTCGCGAGGAG
LOC_Os11g18110
OsAffx.7138.1.S1_at--151--7851Chr11:10169628..10169652 (25 bp)
GGTACGTGTACAGGAATGAGCAGAA
LOC_Os11g18110
OsAffx.7138.1.S1_at--480--2991Chr11:10169642..10170147 (25 bp)
AATGAGCAGAAGGTGGTCCACACGC
NONE
OsAffx.7138.1.S1_at--931--1511Chr11:10169646..10170151 (25 bp)
AGCAGAAGGTGGTCCACACGCGCGA
NONE
OsAffx.7138.1.S1_at--1151--951Chr11:10170229..10170253 (25 bp)
AGGAGCCTCGCGGACCGGCGGTAGC
NONE
Target Sequence 
TCACCAACCGTGTCACCCGAAGAGGCGGTAAAGGCAATGGCGGCAGCGGAGGATGGTTGGATGGGGCCAACTTGAACAAT
GGCAAGCTCGAGAGGTTCTACGTCGTCCTCTGCATCATCGAGGTGGTGGCACTGCTGTCCTACGTATTCTTCGCGAGGAG
GTACGTGTACAGGAATGAGCAGAAGGTGGTCCACACGCGCGAGTGCGATGGGGGCGACGACTGGGCATGGTGGTGCGGCG
GCGTGCGACGGCGGCAGAGGAGGGAAGGAAGGGGGCCGGAGGAGCCTCGCGGACCGGCGGTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis