Browse Element(s) Details


OsAffx.7154.1.S1_at

Description tigr:9639.m01819
TID=OsAffx.7154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1950011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19460Os.16631.1.S1_x_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19460OsAffx.31060.1.S1_s_at11/1111+11180055..11185011haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os11g19470NANA11+11188542..11188862hypothetical protein
LOC_Os11g19480Os.51067.1.S1_x_at11/1111+11190348..11192066Leucine Rich Repeat family protein, expressed
LOC_Os11g19490Os.55572.1.S1_at11/1111+11199239..11201659Protein kinase domain containing protein, expressed
LOC_Os11g19500OsAffx.7154.1.S1_at11/1111+11205699..11208063expressed protein
LOC_Os11g19510NANA11+11220875..11222955Transposable element protein, putative, Transposase_28
LOC_Os11g19520Os.1709.1.S1_x_at7/1111+11224641..11230702retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os11g19520OsAffx.3292.1.S1_s_at1/1111+11224641..11230702retrotransposon protein, putative, Ty3-gypsy subclass, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7154.1.S1_at--1143--1671Chr11:11207954..11207978 (25 bp)
AGCCTATGAATAGTCGCTTCCATTG
LOC_Os11g19500
OsAffx.7154.1.S1_at--899--4191Chr11:11207919..11207943 (25 bp)
CCCCACTATTTCTGCTTCAAATGTG
LOC_Os11g19500
OsAffx.7154.1.S1_at--937--731Chr11:11207852..11207876 (25 bp)
ATGTTTGCTGCCCTGAGCCAGGATG
LOC_Os11g19500
OsAffx.7154.1.S1_at--747--6991Chr11:11207828..11207852 (25 bp)
GTACTATTGGTGAGCTTACCTACGA
LOC_Os11g19500
OsAffx.7154.1.S1_at--619--2351Chr11:11207769..11207793 (25 bp)
AAAGCTTGGGAATCTGCAAACCTAA
LOC_Os11g19500
OsAffx.7154.1.S1_at--364--2371Chr11:11207752..11207776 (25 bp)
AAACCTAAGGGATTCTGCTATGCTA
LOC_Os11g19500
OsAffx.7154.1.S1_at--510--6291Chr11:11207661..11207685 (25 bp)
GATGATTGCCTTGATCCGCTGCATA
LOC_Os11g19500
OsAffx.7154.1.S1_at--831--3911Chr11:11207209..11207658 (25 bp)
CTGGCAATTGCAAAAGGTCTTCTCT
LOC_Os11g19500
OsAffx.7154.1.S1_at--740--7811Chr11:11207194..11207218 (25 bp)
GGTCTTCTCTATGCAAATATTGGCT
LOC_Os11g19500
OsAffx.7154.1.S1_at--674--2251Chr11:11207180..11207204 (25 bp)
AAATATTGGCTGGTTTCCTCTTGCT
LOC_Os11g19500
OsAffx.7154.1.S1_at--374--4911Chr11:11207158..11207182 (25 bp)
GCTTCTATCCTCTTGAGCTGTATTT
LOC_Os11g19500
Target Sequence 
AGCCTATGAATAGTCGCTTCCATTGCGAAGGTTGCCCCCACTATTTCTGCTTCAAATGTGTTTTAGATCATATTAGTTAC
CGTGTATTGGGTGGTGATGCCCATGTTTGCTGCCCTGAGCCAGGATGTACTATTGGTGAGCTTACCTACGAGAAGTGGTA
CAAGCATGTCAGGGGTGATGTGCGCAAAGCTTGGGAATCTGCAAACCTAAGGGATTCTGCTATGCTAAAAAGGTGTGGAA
GTTGTGGAAAATTTTTGGAAGGGGTCACTTTGGACGGGATGGAGGGTGGTAGGGATGATTGCCTTGATCCGCTGCATACC
CTGGCAATTGCAAAAGGTCTTCTCTATGCAAATATTGGCTGGTTTCCTCTTGCTTCTATCCTCTTGAGCTGTATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis