Browse Element(s) Details


OsAffx.7210.1.S1_at

Description tigr:9639.m02372
TID=OsAffx.7210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2660011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g26560OsAffx.7209.1.S1_at11/1111+14719764..14721075hypothetical protein
LOC_Os11g26570OsAffx.31140.1.S1_at11/1111+14723357..14724530Dehydrin family protein, expressed
LOC_Os11g26580OsAffx.19026.1.S1_at11/1111+14726734..14727104hypothetical protein
LOC_Os11g26590NANA11+14729109..14729926retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g26600OsAffx.7210.1.S1_at11/1111+14743716..14744404hypothetical protein
LOC_Os11g26620OsAffx.31141.1.S1_at11/1111+14753110..14756689hypothetical protein
LOC_Os11g26630OsAffx.30665.1.A1_x_at1/1111+14760124..14760504hypothetical protein
LOC_Os11g26630OsAffx.24317.2.S1_x_at1/1111+14760124..14760504hypothetical protein
LOC_Os11g26640OsAffx.24317.2.S1_x_at5/1111+14761349..14761775hypothetical protein
LOC_Os11g26650NANA11+14763111..14767615retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g26660OsAffx.24317.2.S1_x_at2/1111+14768263..14768643hypothetical protein
LOC_Os11g26660OsAffx.30665.1.A1_x_at1/1111+14768263..14768643hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7210.1.S1_at--1160--2531Chr11:14744185..14744209 (25 bp)
AACTGCAAGCAAGATCGGAAGCAAT
LOC_Os11g26600
OsAffx.7210.1.S1_at--902--2431Chr11:14744144..14744168 (25 bp)
AAAAGGCAGCCAGCATTGGAGTTAA
LOC_Os11g26600
OsAffx.7210.1.S1_at--55--1691Chr11:14744137..14744161 (25 bp)
AGCCAGCATTGGAGTTAAACTTAAT
LOC_Os11g26600
OsAffx.7210.1.S1_at--815--2391Chr11:14744121..14744145 (25 bp)
AAACTTAATGTTTGCGCCGTGACCG
LOC_Os11g26600
OsAffx.7210.1.S1_at--744--2971Chr11:14744115..14744139 (25 bp)
AATGTTTGCGCCGTGACCGCCGGTG
LOC_Os11g26600
OsAffx.7210.1.S1_at--296--2591Chr11:14744053..14744077 (25 bp)
AACCCTTGAGCAATGCCTTCCAAAG
LOC_Os11g26600
OsAffx.7210.1.S1_at--740--591Chr11:14744041..14744065 (25 bp)
ATGCCTTCCAAAGTGCAACTACAAG
LOC_Os11g26600
OsAffx.7210.1.S1_at--186--1071Chr11:14743783..14743807 (25 bp)
AGGGATGTGCTGCTAATCAACCAAC
LOC_Os11g26600
OsAffx.7210.1.S1_at--421--7311Chr11:14743777..14743801 (25 bp)
GTGCTGCTAATCAACCAACTATGGT
LOC_Os11g26600
OsAffx.7210.1.S1_at--269--1711Chr11:14743764..14743788 (25 bp)
ACCAACTATGGTTCCAATTCATAAA
LOC_Os11g26600
OsAffx.7210.1.S1_at--912--3171Chr11:14743750..14743774 (25 bp)
CAATTCATAAAACCATGATGGGTCG
LOC_Os11g26600
Target Sequence 
AACTGCAAGCAAGATCGGAAGCAATATGTTGATGGGAGTAAAAAAGGCAGCCAGCATTGGAGTTAAACTTAATGTTTGCG
CCGTGACCGCCGGTGGGTTCTATTGCTGTTCAAAGGACCAGCTGTGCTATCCAACCCTTGAGCAATGCCTTCCAAAGTGC
AACTACAAGGAAAAGGGATGTGCTGCTAATCAACCAACTATGGTTCCAATTCATAAAACCATGATGGGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis