Browse Element(s) Details


OsAffx.7259.1.S1_at

Description tigr:9639.m02769
TID=OsAffx.7259.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3060011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g30560Os.7579.1.S1_at11/1111+17282414..17289933oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g30570OsAffx.7258.1.S1_at10/1111+17290352..17292471hypothetical protein
LOC_Os11g30590Os.40626.1.S1_at5/1111+17305183..17308975hAT family dimerisation domain containing protein
LOC_Os11g30590Os.40626.2.S1_x_at5/1111+17305183..17308975hAT family dimerisation domain containing protein
LOC_Os11g30600OsAffx.7259.1.S1_at11/1111+17314337..17317634hypothetical protein
LOC_Os11g30600OsAffx.31230.1.S1_at11/1111+17314337..17317634hypothetical protein
LOC_Os11g30620Os.56208.1.S1_at11/1111+17326822..17328667expressed protein
LOC_Os11g30630OsAffx.7260.1.S1_at3/1111+17330636..17331001NA
LOC_Os11g30640NANA11+17334158..17334634hypothetical protein
LOC_Os11g30650NANA11+17342303..17345516retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7259.1.S1_at--354--1591Chr11:17314377..17314401 (25 bp)
AGCTCGGTGGCATTCTCCACATTAT
LOC_Os11g30600
OsAffx.7259.1.S1_at--320--8291Chr11:17314385..17314409 (25 bp)
GGCATTCTCCACATTATTGAAGTAA
LOC_Os11g30600
OsAffx.7259.1.S1_at--558--2811Chr11:17314404..17314428 (25 bp)
AAGTAAGGGAGAACAATGGCAGTAA
LOC_Os11g30600
OsAffx.7259.1.S1_at--396--851Chr11:17314419..17314443 (25 bp)
ATGGCAGTAATGATCGGGACCTCAT
LOC_Os11g30600
OsAffx.7259.1.S1_at--1101--2991Chr11:17314427..17314451 (25 bp)
AATGATCGGGACCTCATCAAACGTT
LOC_Os11g30600
OsAffx.7259.1.S1_at--96--9611Chr11:17314440..17314678 (25 bp)
TCATCAAACGTTACAGTGGGCAGAT
LOC_Os11g30600
OsAffx.7259.1.S1_at--866--2371Chr11:17314445..17314683 (25 bp)
AAACGTTACAGTGGGCAGATTATAT
LOC_Os11g30600
OsAffx.7259.1.S1_at--516--2131Chr11:17314452..17314690 (25 bp)
ACAGTGGGCAGATTATATGTATATA
LOC_Os11g30600
OsAffx.7259.1.S1_at--719--9891Chr11:17314706..17314730 (25 bp)
TACTTCGGAAATTGACATGGTCTCT
LOC_Os11g30600
OsAffx.7259.1.S1_at--555--8151Chr11:17314712..17314736 (25 bp)
GGAAATTGACATGGTCTCTGAAAAA
LOC_Os11g30600
OsAffx.7259.1.S1_at--468--2451Chr11:17314733..17314757 (25 bp)
AAAATATATTCCTTGCTTAACCATC
LOC_Os11g30600
Target Sequence 
AGCTCGGTGGCATTCTCCACATTATTGAAGTAAGGGAGAACAATGGCAGTAATGATCGGGACCTCATCAAACGTTACAGT
GGGCAGATTATATGTATATATAGAGAGAAAAATGATACTTCGGAAATTGACATGGTCTCTGAAAAATATATTCCTTGCTT
AACCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7259.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis