Browse Element(s) Details


OsAffx.7275.1.S1_at

Description tigr:9639.m02943
TID=OsAffx.7275.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3238011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32340OsAffx.19117.1.S1_at11/1111+18602728..18603263hypothetical protein
LOC_Os11g32350OsAffx.7274.1.S1_at8/1111+18606675..18608603hypothetical protein
LOC_Os11g32360Os.14956.1.S1_at11/1111+18611153..18615087expressed protein
LOC_Os11g32370OsAffx.19119.1.S1_at11/1111+18620555..18622041hypothetical protein
LOC_Os11g32380OsAffx.7275.1.S1_at11/1111+18625705..18626385hypothetical protein
LOC_Os11g32390Os.54073.1.S1_at5/1111+18627166..18628828hypothetical protein
LOC_Os11g32400OsAffx.31268.1.S1_at11/1111+18631460..18631768hypothetical protein
LOC_Os11g32410OsAffx.19120.1.S1_x_at11/1111+18632581..18635944expressed protein
LOC_Os11g32410Os.53128.1.S1_at11/1111+18632581..18635944expressed protein
LOC_Os11g32420Os.14919.1.S1_at7/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32420Os.56216.1.S1_at2/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32420OsAffx.29313.1.S1_at1/1111+18636717..18642716transposon protein, putative, Mutator sub-class
LOC_Os11g32430OsAffx.31269.1.S1_at11/1111+18646412..18648222hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7275.1.S1_at--877--6491Chr11:18625885..18625909 (25 bp)
GATATGCTGAGATCCGCGGCGGACT
LOC_Os11g32380
OsAffx.7275.1.S1_at--193--1211Chr11:18625937..18625961 (25 bp)
AGTTCATGGACCTTATGCGGCTGGA
LOC_Os11g32380
OsAffx.7275.1.S1_at--233--8371Chr11:18625972..18625996 (25 bp)
GGCGTCCCTGTCAAGAAATCGTTGT
LOC_Os11g32380
OsAffx.7275.1.S1_at--797--10391Chr11:18625993..18626017 (25 bp)
TTGTTCGATTGGATCCGGACCGCCT
LOC_Os11g32380
OsAffx.7275.1.S1_at--331--4371Chr11:18626018..18626042 (25 bp)
CCACGGATGTGCTTACTTCTTCTCA
LOC_Os11g32380
OsAffx.7275.1.S1_at--445--9351Chr11:18626058..18626082 (25 bp)
TCGCATCCTGGAACAAATCACGCTG
LOC_Os11g32380
OsAffx.7275.1.S1_at--93--8951Chr11:18626133..18626157 (25 bp)
TGACGTGCAGCAGTATCTCATCACC
LOC_Os11g32380
OsAffx.7275.1.S1_at--521--391Chr11:18626152..18626176 (25 bp)
ATCACCCCGCACGAAATGTCATGGT
LOC_Os11g32380
OsAffx.7275.1.S1_at--242--6351Chr11:18626233..18626257 (25 bp)
GATGCCGCCACGAGTGATGTTGCTG
LOC_Os11g32380
OsAffx.7275.1.S1_at--980--6111Chr11:18626265..18626289 (25 bp)
GAGTGATCCTGTGGAGTTGCTCAAA
LOC_Os11g32380
OsAffx.7275.1.S1_at--625--911Chr11:18626302..18626326 (25 bp)
AGGCTGCTGGACAAGGTTGCGCATC
LOC_Os11g32380
Target Sequence 
GATATGCTGAGATCCGCGGCGGACTACTACCTCAATCTCGACCTCCTCTACGAGTTCATGGACCTTATGCGGCTGGATCT
GCGCGACGGCGTCCCTGTCAAGAAATCGTTGTTCGATTGGATCCGGACCGCCTCCACGGATGTGCTTACTTCTTCTCACC
CATCGTCGACTCGTCGCATCCTGGAACAAATCACGCTGGAGGCACAGCTAATCGGGCGAGTGGCCAAGGGATTGGGCTTC
GGGGCGGATGACGTGCAGCAGTATCTCATCACCCCGCACGAAATGTCATGGTATCTGGAAGAGGATGCAGTTGCGGTAAG
AAAGAGGAGAGCAAGTTTGAGTTCGGGTGATGCCGCCACGAGTGATGTTGCTGCGGGAGCGAGTGATCCTGTGGAGTTGC
TCAAAAACCACAAGCAGAGGCTGCTGGACAAGGTTGCGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis