Browse Element(s) Details


OsAffx.7289.1.S1_at

Description tigr:9639.m03053
TID=OsAffx.7289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3399011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g33960OsAffx.2735.1.S1_at9/1111+19338980..19345603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g33970OsAffx.7288.1.S1_at11/1111+19357334..19358206expressed protein
LOC_Os11g33980OsAffx.31287.1.S1_at11/1111+19358315..19362454hypothetical protein
LOC_Os11g33980OsAffx.20497.1.S1_at1/1111+19358315..19362454hypothetical protein
LOC_Os11g33990OsAffx.7289.1.S1_at11/1111+19368786..19369638expressed protein
LOC_Os11g34000OsAffx.30422.2.S1_x_at11/1111+19370862..19371146hypothetical protein
LOC_Os11g34000OsAffx.30422.1.S1_x_at1/1111+19370862..19371146hypothetical protein
LOC_Os11g34010OsAffx.19147.1.S1_at11/1111+19372416..19372758hypothetical protein
LOC_Os11g34020OsAffx.19148.1.S1_x_at11/1111+19374030..19374944expressed protein
LOC_Os11g34030OsAffx.7291.1.S1_at11/1111+19387263..19388599hypothetical protein
LOC_Os11g34040OsAffx.31288.1.S1_at11/1111+19392318..19392814hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7289.1.S1_at--492--10031Chr11:19369293..19369317 (25 bp)
TAGAGGCTGCTGTGCGGGCTCATCA
LOC_Os11g33990
OsAffx.7289.1.S1_at--120--1691Chr11:19369231..19369255 (25 bp)
AGCCTCATCGCTGCTGAACAGGTTG
LOC_Os11g33990
OsAffx.7289.1.S1_at--600--5491Chr11:19369216..19369240 (25 bp)
GAACAGGTTGCTGATGATCCCTCTC
LOC_Os11g33990
OsAffx.7289.1.S1_at--799--8451Chr11:19369169..19369193 (25 bp)
TGGCCGTGTCGATGAGGTTGTCCAA
LOC_Os11g33990
OsAffx.7289.1.S1_at--942--8871Chr11:19369079..19369103 (25 bp)
TGAGGAACATGCTCTCCGTGGAATC
LOC_Os11g33990
OsAffx.7289.1.S1_at--245--10451Chr11:19369031..19369055 (25 bp)
TTAGCACGCCGCCTCTGAAGGTTAT
LOC_Os11g33990
OsAffx.7289.1.S1_at--634--5531Chr11:19368964..19368988 (25 bp)
GAAACGGATTCCTGCTTCTTGGAGC
LOC_Os11g33990
OsAffx.7289.1.S1_at--14--8091Chr11:19368944..19368968 (25 bp)
GGAGCTCCGCAGCACATGGAATCAT
LOC_Os11g33990
OsAffx.7289.1.S1_at--334--331Chr11:19368921..19368945 (25 bp)
ATGAAAACCCCGTTTGATCGTCCTG
LOC_Os11g33990
OsAffx.7289.1.S1_at--667--491Chr11:19368905..19368929 (25 bp)
ATCGTCCTGCACTGTTTTGGTGGCA
LOC_Os11g33990
OsAffx.7289.1.S1_at--721--1011Chr11:19368881..19368905 (25 bp)
AGGTACCACGGATGTTTCTCTGAAC
LOC_Os11g33990
Target Sequence 
TAGAGGCTGCTGTGCGGGCTCATCACCGCTCCCCTGCTGAGATTGTTGAACAGCGCCGCCACAGCCTCATCGCTGCTGAA
CAGGTTGCTGATGATCCCTCTCGATTTCAGCAGCGCCACGTCCCTGGCCGTGTCGATGAGGTTGTCCAAGAAGATGACGG
CCGCCATCGCGTCGTTGCCGGCGCCGGGGTGCATCCGCTCGAACGCCATCAGGTTGAGGAACATGCTCTCCGTGGAATCC
ATCACATGAAGCAACGGGATGGTTAGCACGCCGCCTCTGAAGGTTATCGCCCCTGCGAATCCACCACCAGCATCGGCGGC
GGCCACCTTGAAACGGATTCCTGCTTCTTGGAGCTCCGCAGCACATGGAATCATGAAAACCCCGTTTGATCGTCCTGCAC
TGTTTTGGTGGCAGGTACCACGGATGTTTCTCTGAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis