Browse Element(s) Details


OsAffx.7293.1.S1_at

Description tigr:9639.m03123
TID=OsAffx.7293.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=LysM domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3462411/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g34570OsAffx.19157.1.S1_at10/1111+19738097..19739375LysM domain containing protein
LOC_Os11g34580OsAffx.31297.1.S1_at11/1111+19740269..19740538hypothetical protein
LOC_Os11g34590Os.28943.1.S1_x_at2/1111+19742786..19746022retrotransposon protein, putative, unclassified
LOC_Os11g34600NANA11+19746646..19752225retrotransposon protein, putative, unclassified
LOC_Os11g34610OsAffx.19158.1.S1_at9/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34610OsAffx.19159.1.S1_at2/1111+19755594..19759786Serine/threonine-protein kinase receptor precursor, putative
LOC_Os11g34624OsAffx.7293.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624OsAffx.19159.1.S1_at11/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34624Os.48647.1.A1_at1/1111+19763038..19774617Protein kinase domain containing protein, expressed
LOC_Os11g34640NANA11+19775335..19776520hypothetical protein
LOC_Os11g34650Os.10763.1.S1_at11/1111+19776764..19780176hypothetical protein
LOC_Os11g34650Os.10763.2.S1_x_at11/1111+19776764..19780176hypothetical protein
LOC_Os11g34660OsAffx.30202.1.S1_x_at3/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os11g34660OsAffx.6233.1.S1_at3/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os11g34660Os.35273.2.S1_at1/1111+19789850..19812688Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7293.1.S1_at--909--10651Chr11:19763332..19763356 (25 bp)
TTCCGCTGCCTCTGTAATGTTGCCA
LOC_Os11g34624
OsAffx.7293.1.S1_at--391--2991Chr11:19763347..19763371 (25 bp)
AATGTTGCCACCAGAGTCGGCCGGT
LOC_Os11g34624
OsAffx.7293.1.S1_at--887--3531Chr11:19763385..19763409 (25 bp)
CATCTACCTTGTTGGGTCGCAGGAC
LOC_Os11g34624
OsAffx.7293.1.S1_at--50--8791Chr11:19763435..19763459 (25 bp)
TGTTCGACGGCTTCGTGACGTACCA
LOC_Os11g34624
OsAffx.7293.1.S1_at--764--1891Chr11:19763452..19763476 (25 bp)
ACGTACCAGGAGATCGCGGACGCGA
LOC_Os11g34624
OsAffx.7293.1.S1_at--988--2491Chr11:19763479..19763503 (25 bp)
AACATCCCCGATCCCAATAAGATAT
LOC_Os11g34624
OsAffx.7293.1.S1_at--198--351Chr11:19763495..19763519 (25 bp)
ATAAGATATTCGTCGGGCAGGAGCT
LOC_Os11g34624
OsAffx.7293.1.S1_at--295--2591Chr11:19763563..19763587 (25 bp)
AACGTCACGCACTTCGCTTACAAAG
LOC_Os11g34624
OsAffx.7293.1.S1_at--898--9371Chr11:19763636..19763660 (25 bp)
TCGAGTCCACGCTAATGAGGATCAA
LOC_Os11g34624
OsAffx.7293.1.S1_at--245--6571Chr11:19763697..19763721 (25 bp)
GATTCTTGATGTCCCAATACCTGGT
LOC_Os11g34624
OsAffx.7293.1.S1_at--668--311Chr11:19763713..19763737 (25 bp)
ATACCTGGTATGAACTTTTCTCTTT
LOC_Os11g34624
Target Sequence 
TTCCGCTGCCTCTGTAATGTTGCCACCAGAGTCGGCCGGTCAGACTACCGGCCCATCTACCTTGTTGGGTCGCAGGACGG
GCTCGACGCGATCGCGCGCAAGGTGTTCGACGGCTTCGTGACGTACCAGGAGATCGCGGACGCGAGCAACATCCCCGATC
CCAATAAGATATTCGTCGGGCAGGAGCTGTGGATTCCGCTGCCCTGCAGCTGCGACCAGGTGGATGGCCACAACGTCACG
CACTTCGCTTACAAAGTCCGCGCCGTGGACACCACGTCGGCGATCGCCGCCAAGTTTGGGGTCCTCGAGTCCACGCTAAT
GAGGATCAATGGGATAACCGATCCCAAAAACCTAGTCCAGGGGCAGATTCTTGATGTCCCAATACCTGGTATGAACTTTT
CTCTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7293.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis