Browse Element(s) Details


OsAffx.7337.1.S1_at

Description tigr:9639.m03479
TID=OsAffx.7337.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3833011/11expressed protein
LOC_Os09g295841/11wall-associated kinase 3, putative, expressed
LOC_Os01g231301/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38300OsAffx.31479.1.S1_x_at11/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38300OsAffx.31479.4.S1_x_at9/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38310OsAffx.31479.5.S1_x_at11/1111+22179008..22183269hypothetical protein
LOC_Os11g38320Os.20602.2.S1_x_at11/1111+22193303..22195477hAT family dimerisation domain containing protein
LOC_Os11g38330Os.6094.1.S1_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330Os.6094.2.A1_s_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.7337.1.S1_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.766.1.S1_at3/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.17065.1.A1_s_at1/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.17065.1.A1_at1/1111+22196370..22202867expressed protein
LOC_Os11g38340OsAffx.7338.1.S1_at11/1111+22207571..22210922hypothetical protein
LOC_Os11g38350NANA11+22211706..22213103retrotransposon protein, putative, unclassified
LOC_Os11g38360NANA11+22214002..22217899retrotransposon protein, putative, unclassified
LOC_Os11g38370OsAffx.32072.2.S1_x_at5/1111+22226290..22226544hypothetical protein
LOC_Os11g38370OsAffx.32072.1.S1_x_at4/1111+22226290..22226544hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005618cellular_componentcell wall
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004221molecular_functionubiquitin thiolesterase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7337.1.S1_at--208--3831Chr11:22201361..22201385 (25 bp)
CTGCGTGAACAAACCAGGTGGAGAA
LOC_Os11g38330
OsAffx.7337.1.S1_at--835--2993Chr11:22201386..22201410 (25 bp)
AATGATTTCATTGCCATTTTTCACA
LOC_Os11g38330
OsAffx.7337.1.S1_at--682--3331Chr11:22201409..22201433 (25 bp)
CACTGTTGATGTGGGTGCAGTTCAA
LOC_Os11g38330
OsAffx.7337.1.S1_at--319--2391Chr11:22201435..22201538 (25 bp)
AAACTGAGATGAAGTCTTTTGGTGA
LOC_Os11g38330
OsAffx.7337.1.S1_at--311--5331Chr11:22201524..22201548 (25 bp)
GAAGTCTTTTGGTGATATCCTGAAA
LOC_Os11g38330
OsAffx.7337.1.S1_at--945--10391Chr11:22201530..22201554 (25 bp)
TTTTGGTGATATCCTGAAAGCTGCA
LOC_Os11g38330
OsAffx.7337.1.S1_at--454--3851Chr11:22201550..22201574 (25 bp)
CTGCAGAACTTGATGTGGAGAGCTG
LOC_Os11g38330
OsAffx.7337.1.S1_at--560--4511Chr11:22201574..22201597 (24 bp)
GCCGATGTGGAAACAAGACTGAGGT
LOC_Os11g38330
OsAffx.7337.1.S1_at--825--5691Chr11:22201590..22201945 (25 bp)
GACTGAGGTTTTTAGCTGGCCAACT
LOC_Os11g38330
OsAffx.7337.1.S1_at--464--6151Chr11:22201928..22201949 (22 bp)
GAGGTTTTTAGCTGGCCAACTGAGA
LOC_Os11g38330
OsAffx.7337.1.S1_at--1137--10351Chr11:22201929..22201953 (25 bp)
TTTTTAGCTGGCCAACTGAGAAGGA
LOC_Os11g38330
Target Sequence 
CTGCGTGAACAAACCAGGTGGAGAAAATGATTTCATTGCCATTTTTCACACTGTTGATGTGGGTGCAGTTCAAAAAACTG
AGATGAAGTCTTTTGGTGATATCCTGAAAGCTGCAGAACTTGATGTGGAGAGCTGCCGATGTGGAAACAAGACTGAGGTT
TTTAGCTGGCCAACTGAGAAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7337.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis