Browse Element(s) Details


OsAffx.7338.1.S1_at

Description tigr:9639.m03480
TID=OsAffx.7338.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3834011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38310OsAffx.31479.5.S1_x_at11/1111+22179008..22183269hypothetical protein
LOC_Os11g38320Os.20602.2.S1_x_at11/1111+22193303..22195477hAT family dimerisation domain containing protein
LOC_Os11g38330Os.6094.1.S1_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330Os.6094.2.A1_s_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.7337.1.S1_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.766.1.S1_at3/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.17065.1.A1_s_at1/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.17065.1.A1_at1/1111+22196370..22202867expressed protein
LOC_Os11g38340OsAffx.7338.1.S1_at11/1111+22207571..22210922hypothetical protein
LOC_Os11g38350NANA11+22211706..22213103retrotransposon protein, putative, unclassified
LOC_Os11g38360NANA11+22214002..22217899retrotransposon protein, putative, unclassified
LOC_Os11g38370OsAffx.32072.2.S1_x_at5/1111+22226290..22226544hypothetical protein
LOC_Os11g38370OsAffx.32072.1.S1_x_at4/1111+22226290..22226544hypothetical protein
LOC_Os11g38380OsAffx.7340.1.S1_at11/1111+22227878..22231599hypothetical protein
LOC_Os11g38390OsAffx.7340.2.S1_at11/1111+22234094..22236108hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7338.1.S1_at--374--1011Chr11:22208766..22208790 (25 bp)
AGGTTGTCCGGCCATGCTCTGATTG
LOC_Os11g38340
OsAffx.7338.1.S1_at--933--1051Chr11:22208707..22208731 (25 bp)
AGGGTCATTCCCTCGAAATCTGTAT
LOC_Os11g38340
OsAffx.7338.1.S1_at--1004--6891Chr11:22208686..22208710 (25 bp)
GTATCAGCTCTGTTCGTCTTTGAGA
LOC_Os11g38340
OsAffx.7338.1.S1_at--863--7991Chr11:22208282..22208402 (25 bp)
GGATGTGCACCTGACGATGCTATGA
LOC_Os11g38340
OsAffx.7338.1.S1_at--275--5591Chr11:22207792..22207813 (22 bp)
GAAATGCTTGATACTGTCCTGCCTC
LOC_Os11g38340
OsAffx.7338.1.S1_at--401--7811Chr11:22207739..22207763 (25 bp)
GGTCGGCGCATCTCTGAACAGATCA
LOC_Os11g38340
OsAffx.7338.1.S1_at--107--2891Chr11:22207715..22207739 (25 bp)
AAGGTGGTGTCCAATAGCCCAGCAA
LOC_Os11g38340
OsAffx.7338.1.S1_at--215--1671Chr11:22207700..22207724 (25 bp)
AGCCCAGCAAGCCAAATACCGTGAT
LOC_Os11g38340
OsAffx.7338.1.S1_at--135--931Chr11:22207668..22207692 (25 bp)
AGGCATTGGCGGGTGTTACTCCAAA
LOC_Os11g38340
OsAffx.7338.1.S1_at--332--7731Chr11:22207638..22207662 (25 bp)
GGTGGCGTCGATTCCGTCAAGACGA
LOC_Os11g38340
OsAffx.7338.1.S1_at--280--6311Chr11:22207603..22207627 (25 bp)
GATGAGACCATAACTGCGAACGCCA
LOC_Os11g38340
Target Sequence 
AGGTTGTCCGGCCATGCTCTGATTGCCATCAAAATGAAGAAGGCCTTCAAAATTGTCAGAGGGTCATTCCCTCGAAATCT
GTATCAGCTCTGTTCGTCTTTGAGAATATTGCACAGAGAAGTTGTGAAGGAAACAAGATTTGTTTTGTGGAATGCTCCAA
AGGAGAGAGAACAGGGTGTAATCTACCAGAACTATAGCCCAATGCACAGGGGTGACCAAGTTTATCAGAGTGAAGTTTGG
CTCACTGAGCTTTGGAATGGAAATATGTGGGTTAACTTGTCACAGTTTGGATGTGCACCTGACGATGCTATGAGGCAAGA
CCCTTGGAAGAACCAGAATGACAACGTATATGAAATGCTTGATACTGTCCTGCCTCTGGCCGGCATCCGTGCGCTGTTCT
GCACGGTCGGCGCATCTCTGAACAGATCAAGGTGGTGTCCAATAGCCCAGCAAGCCAAATACCGTGATAGTGTCAAGGCA
TTGGCGGGTGTTACTCCAAAATATCGGTGGCGTCGATTCCGTCAAGACGAGTCATGGATTGATGAGACCATAACTGCGAA
CGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7338.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis