Browse Element(s) Details


OsAffx.7399.1.S1_at

Description tigr:9639.m04058
TID=OsAffx.7399.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4384011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43800NANA11+25948914..25953290salt-inducible protein, putative
LOC_Os11g43810Os.27102.1.S1_x_at1/1111+25957958..25958965hypothetical protein
LOC_Os11g43820Os.10557.1.S1_at11/1111+25961661..25966459Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os11g43830Os.54890.1.S1_at11/1111+25968723..25971265Pectinesterase family protein, expressed
LOC_Os11g43840OsAffx.7399.1.S1_at11/1111+25973105..25973643hypothetical protein
LOC_Os11g43850OsAffx.7400.1.S1_at11/1111+25974007..25976099Pectinesterase family protein
LOC_Os11g43850Os.54890.1.S1_at1/1111+25974007..25976099Pectinesterase family protein
LOC_Os11g43860Os.38169.1.S1_at11/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43860Os.38169.1.S1_a_at11/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43860Os.38169.2.S1_at8/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43870Os.20602.2.S1_x_at10/1111+25986362..25988536hAT family dimerisation domain containing protein
LOC_Os11g43880Os.47130.4.A1_x_at4/1111+25990368..25990691retrotransposon protein, putative, unclassified
LOC_Os11g43890Os.12269.2.A1_at11/1111+25994866..25997529expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7399.1.S1_at--26--6311Chr11:25973590..25973613 (24 bp)
GATGAGGCCGATATATTTCATTGGA
LOC_Os11g43840
OsAffx.7399.1.S1_at--834--5691Chr11:25973236..25973260 (25 bp)
GACTATTATGGCGTGTACAAGTGCT
LOC_Os11g43840
OsAffx.7399.1.S1_at--343--10111Chr11:25973230..25973254 (25 bp)
TATGGCGTGTACAAGTGCTCTGGGC
LOC_Os11g43840
OsAffx.7399.1.S1_at--1045--1111Chr11:25973217..25973241 (25 bp)
AGTGCTCTGGGCCTGGTTTGGAAGC
LOC_Os11g43840
OsAffx.7399.1.S1_at--35--811Chr11:25973182..25973206 (25 bp)
ATGGGCTGGGCCAAAGAGCTCACTG
LOC_Os11g43840
OsAffx.7399.1.S1_at--1014--8331Chr11:25973179..25973203 (25 bp)
GGCTGGGCCAAAGAGCTCACTGATG
LOC_Os11g43840
OsAffx.7399.1.S1_at--7--2351Chr11:25973170..25973194 (25 bp)
AAAGAGCTCACTGATGGCTTCCCCT
LOC_Os11g43840
OsAffx.7399.1.S1_at--661--5912Chr12:24477268..24477297 (23 bp)
GAGCTCACTGATGGCTTCCCCTATG
NONE
OsAffx.7399.1.S1_at--1098--8871Chr11:25973159..25973183 (25 bp)
TGATGGCTTCCCCTATGCCAACCAA
LOC_Os11g43840
OsAffx.7399.1.S1_at--357--9211Chr11:25973144..25973168 (25 bp)
TGCCAACCAAGAATTTATCTCGGGT
LOC_Os11g43840
OsAffx.7399.1.S1_at--481--3231Chr11:25973141..25973165 (25 bp)
CAACCAAGAATTTATCTCGGGTGAA
LOC_Os11g43840
Target Sequence 
GATGAGGCCGATATATTTCATTGGAGCGGGGACTATTATGGCGTGTACAAGTGCTCTGGGCCTGGTTTGGAAGCAAGCAA
GAAGATGGGCTGGGCCAAAGAGCTCACTGATGGCTTCCCCTATGCCAACCAAGAATTTATCTCGGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis