Browse Element(s) Details


OsAffx.7400.1.S1_at

Description tigr:9639.m04059
TID=OsAffx.7400.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AY087811 pectin methyl-esterase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4385011/11Pectinesterase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43800NANA11+25948914..25953290salt-inducible protein, putative
LOC_Os11g43810Os.27102.1.S1_x_at1/1111+25957958..25958965hypothetical protein
LOC_Os11g43820Os.10557.1.S1_at11/1111+25961661..25966459Myristoyl-acyl carrier protein thioesterase, chloroplast precursor, putative, expressed
LOC_Os11g43830Os.54890.1.S1_at11/1111+25968723..25971265Pectinesterase family protein, expressed
LOC_Os11g43840OsAffx.7399.1.S1_at11/1111+25973105..25973643hypothetical protein
LOC_Os11g43850OsAffx.7400.1.S1_at11/1111+25974007..25976099Pectinesterase family protein
LOC_Os11g43850Os.54890.1.S1_at1/1111+25974007..25976099Pectinesterase family protein
LOC_Os11g43860Os.38169.1.S1_at11/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43860Os.38169.1.S1_a_at11/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43860Os.38169.2.S1_at8/1111+25981611..25985603magnesium/proton exchanger, putative, expressed
LOC_Os11g43870Os.20602.2.S1_x_at10/1111+25986362..25988536hAT family dimerisation domain containing protein
LOC_Os11g43880Os.47130.4.A1_x_at4/1111+25990368..25990691retrotransposon protein, putative, unclassified
LOC_Os11g43890Os.12269.2.A1_at11/1111+25994866..25997529expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7400.1.S1_at--595--1571Chr11:25975781..25975805 (25 bp)
AGCTACGAGCTGAGCCTGAAGCCGG
LOC_Os11g43850
OsAffx.7400.1.S1_at--730--2871Chr11:25975724..25975748 (25 bp)
AAGGGCAAGGCGTACGTCACCCTCA
LOC_Os11g43850
OsAffx.7400.1.S1_at--375--4471Chr11:25975578..25975598 (21 bp)
GCCTCCGGTGTCGTCATCAAGAATG
LOC_Os11g43850
OsAffx.7400.1.S1_at--325--6671Chr11:25975100..25975124 (25 bp)
GTTGCACTGCGTGTGGCAGGAACAA
LOC_Os11g43850
OsAffx.7400.1.S1_at--393--8151Chr11:25975082..25975106 (25 bp)
GGAACAAAAGCATCCTTCTTCAAAT
LOC_Os11g43850
OsAffx.7400.1.S1_at--912--10491Chr11:25975064..25975088 (25 bp)
TTCAAATGCACGATCGAGGCCGGCG
LOC_Os11g43850
OsAffx.7400.1.S1_at--275--1171Chr11:25974849..25974873 (25 bp)
AGTATGACGGGCTCGACGGGACCAC
LOC_Os11g43850
OsAffx.7400.1.S1_at--987--5011Chr11:25974732..25974756 (25 bp)
GCAGGGCATGGGATGATTCGTCCTT
LOC_Os11g43850
OsAffx.7400.1.S1_at--931--6271Chr11:25974721..25974745 (25 bp)
GATGATTCGTCCTTCGTCGTCTTCT
LOC_Os11g43850
OsAffx.7400.1.S1_at--335--7151Chr11:25974703..25974727 (25 bp)
GTCTTCTCCAATACCATGATGGCGA
LOC_Os11g43850
OsAffx.7400.1.S1_at--250--6171Chr11:25974680..25974704 (25 bp)
GAGGTTGTGCCTATTGGCTTCCAAG
LOC_Os11g43850
Target Sequence 
AGCTACGAGCTGAGCCTGAAGCCGGGGCAGGTGTTCCGCGAGAAGGTGGTGGTCGGCAAGGGCAAGGCGTACGTCACCCT
CAAGTCCGACCCGGCCAACCCCGCCGTCATCGTGTGGAACGACACCGCCGCCACCCTCGGCAAGGACGGCGAGCCCCTCG
GCCACGTCCGCAGCGCCACCCTCACCGTCGAAGCCGACAACTTCGTCGCCTCCGGTGTCGTCATCAAGAATGATGCGCCT
TCGGGGTTGGAAGGAGGAAAGACAGTTGCACTGCGTGTGGCAGGAACAAAAGCATCCTTCTTCAAATGCACGATCGAGGC
CGGCGGGCAAGGCGCGGCGCAGGCGCAGAGGGCGCCCAAGTATGACGGGCTCGACGGGACCACCAACCCCGCTTTCCTCG
GCTTCTCGTTCCACAACTGCACCATCGAGGCCGGCGCCGGCGACTCGGGCGGCGCCGACGACAAGGTCTACCTCGGCAGG
GCATGGGATGATTCGTCCTTCGTCGTCTTCTCCAATACCATGATGGCGAGGTTGTGCCTATTGGCTTCCAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis