Browse Element(s) Details


OsAffx.7401.1.S1_at

Description tigr:9639.m04066
TID=OsAffx.7401.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4392011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43870Os.20602.2.S1_x_at10/1111+25986362..25988536hAT family dimerisation domain containing protein
LOC_Os11g43880Os.47130.4.A1_x_at4/1111+25990368..25990691retrotransposon protein, putative, unclassified
LOC_Os11g43890Os.12269.2.A1_at11/1111+25994866..25997529expressed protein
LOC_Os11g43900Os.6.1.S1_a_at11/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43900Os.6.1.S1_x_at9/1111+26004130..26006355Translationally-controlled tumor protein homolog, putative, expressed
LOC_Os11g43910NANA11+26007706..26008029hypothetical protein
LOC_Os11g43920OsAffx.7401.1.S1_at11/1111+26011205..26011724hypothetical protein
LOC_Os11g43934Os.24654.2.S1_x_at11/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934Os.24654.1.S1_at10/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43934OsAffx.16132.1.S1_at1/1111+26018150..26024227pentatricopeptide, putative, expressed
LOC_Os11g43950Os.27044.1.A1_at11/1111+26036058..26042520expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7401.1.S1_at--142--4051Chr11:26011240..26011264 (25 bp)
CGATTCCTCCGGACGCCAGAGCGGT
LOC_Os11g43920
OsAffx.7401.1.S1_at--1097--4411Chr11:26011254..26011278 (25 bp)
GCCAGAGCGGTGTCTCCGACAAGGT
LOC_Os11g43920
OsAffx.7401.1.S1_at--954--8711Chr11:26011264..26011288 (25 bp)
TGTCTCCGACAAGGTGCGCGGACCT
LOC_Os11g43920
OsAffx.7401.1.S1_at--897--5051Chr11:26011292..26011316 (25 bp)
GCAGCATTCACACACCCTGTAGGAA
LOC_Os11g43920
OsAffx.7401.1.S1_at--92--2171Chr11:26011303..26011327 (25 bp)
ACACCCTGTAGGAATGCGGCTCCTT
LOC_Os11g43920
OsAffx.7401.1.S1_at--891--8451Chr11:26011334..26011358 (25 bp)
TGGCGCGATTATTCCCCTCGGAAAG
LOC_Os11g43920
OsAffx.7401.1.S1_at--869--8151Chr11:26011353..26011591 (25 bp)
GGAAAGGGACAGCACAGCCTCTTGC
LOC_Os11g43920
OsAffx.7401.1.S1_at--344--1691Chr11:26011582..26011606 (25 bp)
AGCCTCTTGCCAATTGGCACGGGAT
LOC_Os11g43920
OsAffx.7401.1.S1_at--846--6111Chr11:26011619..26011643 (25 bp)
GAGTGAGGACACTTACCAAAATTTG
LOC_Os11g43920
OsAffx.7401.1.S1_at--503--1651Chr11:26011651..26011675 (25 bp)
AAGCAATACTTGAGGAACTCCACGA
LOC_Os11g43920
OsAffx.7401.1.S1_at--372--6191Chr11:26011662..26011686 (25 bp)
GAGGAACTCCACGAACAAAATATAA
LOC_Os11g43920
Target Sequence 
CGATTCCTCCGGACGCCAGAGCGGTGTCTCCGACAAGGTGCGCGGACCTCCTGCAGCATTCACACACCCTGTAGGAATGC
GGCTCCTTCCGACGTGGCGCGATTATTCCCCTCGGAAAGGGACAGCACAGCCTCTTGCCAATTGGCACGGGATTGTGAAG
AAGTTGAGTGAGGACACTTACCAAAATTTGACTGCAAAAGCAATACTTGAGGAACTCCACGAACAAAATATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7401.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis