Browse Element(s) Details


OsAffx.7402.2.A1_x_at

Description tigr:9639.m04086
TID=OsAffx.7402.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4411011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g44030OsAffx.7404.1.S1_at11/1111+26105486..26109668expressed protein
LOC_Os11g44040OsAffx.31464.1.S1_at11/1111+26110529..26112322hypothetical protein
LOC_Os11g44050NANA11+26116438..26119362retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44060NANA11+26119678..26122776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44070NANA11+26123098..26125788retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44084NANA11+26128267..26130912transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44100Os.47463.1.S1_x_at3/1111+26131476..26133686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44100Os.14491.2.S1_x_at2/1111+26131476..26133686transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g44110OsAffx.7402.2.A1_x_at11/1111+26134489..26135327hypothetical protein
LOC_Os11g44110OsAffx.7402.2.A1_at11/1111+26134489..26135327hypothetical protein
LOC_Os11g44120OsAffx.19361.1.S1_at11/1111+26136604..26137073hypothetical protein
LOC_Os11g44130NANA11+26138464..26138790retrotransposon protein, putative, unclassified
LOC_Os11g44140NANA11+26143407..26144330retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44150OsAffx.22848.3.S1_x_at4/1111+26144854..26149365retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g44150OsAffx.22848.4.S1_at1/1111+26144854..26149365retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7402.2.A1_x_at--250--3411Chr11:26134593..26134617 (25 bp)
CAGCAGGAAGCAAAAGACATATAAC
LOC_Os11g44110
OsAffx.7402.2.A1_x_at--544--1391Chr11:26134607..26134631 (25 bp)
AGACATATAACATGACGACGATGGA
LOC_Os11g44110
OsAffx.7402.2.A1_x_at--504--5772Chr11:26134623..26134647 (25 bp)
GACGATGGACAGGTCGCCGACGATC
LOC_Os11g44110
OsAffx.7402.2.A1_x_at--894--6611Chr11:26134823..26134847 (25 bp)
GTTGAGGAAGACATCCGTCGAGGAA
LOC_Os11g44110
OsAffx.7402.2.A1_x_at--794--10091Chr11:26134880..26134904 (25 bp)
TATGGCCGGCGAGGTAGGCAAGCAA
LOC_Os11g44110
OsAffx.7402.2.A1_x_at--981--972Chr11:26134966..26134990 (25 bp)
AGGAGAGCCTCCACACGAGGAGCAG
LOC_Os11g44110
OsAffx.7402.2.A1_x_at--587--5652Chr11:26135052..26135076 (25 bp)
GACAGGAGGATCAGCCTCGCCGACC
LOC_Os11g44110
OsAffx.7402.2.A1_x_at--804--1031Chr11:26135154..26135178 (25 bp)
AGGTCGTCGCTGGTGTGCGACTCCC
LOC_Os11g44110
OsAffx.7402.2.A1_x_at--191--1751Chr11:26135232..26135256 (25 bp)
ACCTTCTCGGCGGAGTCATCGGTGA
LOC_Os11g44110
OsAffx.7402.2.A1_x_at--360--7731Chr11:26135258..26135282 (25 bp)
GGTGGCGACCGGAGATTCGTCCATC
LOC_Os11g44110
OsAffx.7402.2.A1_x_at--922--1771Chr11:26135265..26135289 (25 bp)
ACCGGAGATTCGTCCATCTCGCTGG
LOC_Os11g44110
Target Sequence 
CAGCAGGAAGCAAAAGACATATAACATGACGACGATGGACAGGTCGCCGACGATCTCGTCGACGGGGAAATCGGCGATGC
AGCGCGCGGAGACGGAGTTGAGGAAGACATCCGTCGAGGAAGACGACCACCATACCGACGCGCGGGGTGATGGTATGGCC
GGCGAGGTAGGCAAGCAAGGCGGCGAGGAGGCCCCGGGTGACGGAGAGGAGGGCGGCGCAGAGGAAGAGGTAGGCGGTGA
GGAGAGCCTCCACACGAGGAGCAGCGGCTCGCCGCCGGCGGAGAGCCAGAGGAGGACCGGCGCCGTCGCCACCGCGAGCA
GCAGCGACAGGAGGATCAGCCTCGCCGACCGGGCGTCGCGCTCCCGCTCCGCCTTCTCCGCCTCCCTCAGCCTCCTCAGC
TCGTCGAGGAGGCGGCGGCGGAGGAGGAGGTCGTCGCTGGTGTGCGACTCCCCGGCCGCCGCTGCTTTTCTCCTATCCCC
GCTCCGGTCAGCGTCGACGAGGCTCACCTTCTCGGCGGAGTCATCGGTGACGGTGGCGACCGGAGATTCGTCCATCTCGC
TGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7402.2.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis