Browse Element(s) Details


OsAffx.7470.1.S1_x_at

Description tigr:9639.m00281
TID=OsAffx.7470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g035301/11arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os11g037801/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g034801/11Alpha-L-arabinofuranosidase C-terminus family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03480Os.54371.1.S1_x_at11/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.2.S1_at3/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.1.S1_x_at1/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03490OsAffx.31565.1.S1_at1/1112+1377167..1377496hypothetical protein
LOC_Os12g03500OsAffx.7471.1.S1_at11/1112+1387129..1390251expressed protein
LOC_Os12g03500OsAffx.7471.1.S1_x_at11/1112+1387129..1390251expressed protein
LOC_Os12g03510OsAffx.7472.1.S1_at11/1112+1392045..1392655pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g03520NANA12+1394327..1395592retrotransposon protein, putative, unclassified
LOC_Os12g03530Os.51413.1.S1_at11/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03530OsAffx.7470.1.S1_x_at1/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03540Os.8596.1.S1_at2/1112+1404375..1408357expressed protein
LOC_Os12g03554OsAffx.19470.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os12g03554OsAffx.7473.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os12g03570NANA12+1426776..1431538retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016798molecular_functionhydrolase activity, acting on glycosyl bonds
GO:0046556molecular_functionalpha-N-arabinofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7470.1.S1_x_at--820--6331Chr11:1464611..1464635 (25 bp)
GATGCTGGCAATGGAAGCCTCCTTG
NONE
OsAffx.7470.1.S1_x_at--916--6611Chr11:1464640..1464664 (25 bp)
GTTGGCAGAAGCTGCTTTCCTCACT
NONE
OsAffx.7470.1.S1_x_at--154--2491Chr11:1465213..1465235 (23 bp)
AACAGCGATGTCATTCAGATGGCAA
NONE
OsAffx.7470.1.S1_x_at--718--5511Chr11:1465259..1465372 (25 bp)
GAAAATGATCGCACCTGGAACCCAG
NONE
OsAffx.7470.1.S1_x_at--1141--8173Chr12:1402588..1402945 (25 bp)
GGAACCCAGATGCAATTGTCTTCAA
LOC_Os12g03530
OsAffx.7470.1.S1_x_at--2--10812Chr12:1373111..1373135 (25 bp)
TTGTCTTCAACTCCTGGCAACAGTA
LOC_Os12g03480
OsAffx.7470.1.S1_x_at--257--7411Chr11:1465456..1465480 (25 bp)
GTGATTCATCCAGTCACTATCAGCT
NONE
OsAffx.7470.1.S1_x_at--514--1571Chr11:1465483..1465507 (25 bp)
AGCTACTTTGATTTACTGGCAGCAT
NONE
OsAffx.7470.1.S1_x_at--1132--10832Chr11:1465770..1465794 (25 bp)
TTGGGCCAAGTGCTGTGAACCTTAC
NONE
OsAffx.7470.1.S1_x_at--1052--8791Chr11:1465849..1465873 (25 bp)
TGTTCTCACATCCAGCAACTTACTG
NONE
OsAffx.7470.1.S1_x_at--1020--2771Chr11:1466324..1466348 (25 bp)
AAGAGATGCAGTTCTTACTCCTTCC
NONE
Target Sequence 
GATGCTGGCAATGGAAGCCTCCTTGCATCGTTGGCAGAAGCTGCTTTCCTCACTGGTTTAGAGAAAAACAGCGATGTCAT
TCAGATGGCAAGCTATGCACCACTCTTCGTGAATGAAAATGATCGCACCTGGAACCCAGATGCAATTGTCTTCAACTCCT
GGCAACAGTATGGAACTCCTAGTTATTGGATGCAAACATATTTCCGTGAATCAAGTGGTTCTGTGATTCATCCAGTCACT
ATCAGCTCCAGCTACTTTGATTTACTGGCAGCATCTGCAATCACCTGGCAGGACAATGAGGATATCTTTCTGAGGGTAAA
GATAGTAAACTTTGGGCCAAGTGCTGTGAACCTTACAATATCTTCAAGTGGACTTCAAGCTGGTGTAAATGCGGCAAAAT
CAACTGTGACTGTTCTCACATCCAGCAACTTACTGGATGAGAATTCATTTAGTGAACCAAACAAGGTTGTGCCAGTTACA
AGGGAGTTACCCAATGCTGGGCAAGAGATGCAGTTCTTACTCCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7470.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis