Browse Element(s) Details


OsAffx.7472.1.S1_at

Description tigr:9640.m00265
TID=OsAffx.7472.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0351011/11pectinesterase inhibitor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g03480Os.54371.1.S1_x_at11/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.2.S1_at3/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03480OsAffx.7470.1.S1_x_at1/1112+1367910..1374574Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os12g03490OsAffx.31565.1.S1_at1/1112+1377167..1377496hypothetical protein
LOC_Os12g03500OsAffx.7471.1.S1_at11/1112+1387129..1390251expressed protein
LOC_Os12g03500OsAffx.7471.1.S1_x_at11/1112+1387129..1390251expressed protein
LOC_Os12g03510OsAffx.7472.1.S1_at11/1112+1392045..1392655pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g03520NANA12+1394327..1395592retrotransposon protein, putative, unclassified
LOC_Os12g03530Os.51413.1.S1_at11/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03530OsAffx.7470.1.S1_x_at1/1112+1397069..1403937arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I, putative, expressed
LOC_Os12g03540Os.8596.1.S1_at2/1112+1404375..1408357expressed protein
LOC_Os12g03554OsAffx.19470.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein
LOC_Os12g03554OsAffx.7473.1.S1_at11/1112+1411001..1420875Zinc finger C-x8-C-x5-C-x3-H type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7472.1.S1_at--358--3531Chr12:1392520..1392544 (25 bp)
CATGCAAGATCGTCGCTGGCAGCAG
LOC_Os12g03510
OsAffx.7472.1.S1_at--248--1631Chr12:1392494..1392518 (25 bp)
AGCGGCGTCATCAGCGTCACGTTCT
LOC_Os12g03510
OsAffx.7472.1.S1_at--517--5611Chr12:1392353..1392377 (25 bp)
GACAACATCCTTAAGGACGACGGCA
LOC_Os12g03510
OsAffx.7472.1.S1_at--413--5731Chr12:1392335..1392359 (25 bp)
GACGGCAACGGCTTGAAACCCGGCG
LOC_Os12g03510
OsAffx.7472.1.S1_at--499--5811Chr12:1392311..1392335 (25 bp)
GACGCCACGACGGTGTGCTTCCAGT
LOC_Os12g03510
OsAffx.7472.1.S1_at--439--1151Chr12:1392289..1392313 (25 bp)
AGTCGTGCCAGGCAGCATACGCCAG
LOC_Os12g03510
OsAffx.7472.1.S1_at--758--311Chr12:1392273..1392297 (25 bp)
ATACGCCAGCGTGCTACAGGGTCAG
LOC_Os12g03510
OsAffx.7472.1.S1_at--668--9871Chr12:1392259..1392283 (25 bp)
TACAGGGTCAGCTTGGCATCTTCTA
LOC_Os12g03510
OsAffx.7472.1.S1_at--921--431Chr12:1392242..1392266 (25 bp)
ATCTTCTACAACGTGCAGGCTGGCA
LOC_Os12g03510
OsAffx.7472.1.S1_at--1101--751Chr12:1392139..1392163 (25 bp)
ATGTCAAGTCATTGCTCACCACAGA
LOC_Os12g03510
OsAffx.7472.1.S1_at--267--3431Chr12:1392118..1392142 (25 bp)
CAGAGAACCACGACAGCTTTGAGCT
LOC_Os12g03510
Target Sequence 
CATGCAAGATCGTCGCTGGCAGCAGCAGCGGCGTCATCAGCGTCACGTTCTGCATGGACGCGCTCGGTTCCGACAGCCGG
AGCCTCAGCGCCAGCTACTACAGTGACCTCGCCATCATCGCCATCGACCTCCTGACATCCAACACGACGAGCACCAAGGC
CAAGATAGACAACATCCTTAAGGACGACGGCAACGGCTTGAAACCCGGCGACGCCACGACGGTGTGCTTCCAGTCGTGCC
AGGCAGCATACGCCAGCGTGCTACAGGGTCAGCTTGGCATCTTCTACAACGTGCAGGCTGGCAGGTTTCCGGAGGCGATG
TCGGCGTTGGAGAAGGCAGCCAACATGGTGGAGGAATGCGAGAAAGGGTTCGGGAAGAGTAATGTCAAGTCATTGCTCAC
CACAGAGAACCACGACAGCTTTGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7472.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis