Browse Element(s) Details


OsAffx.7495.1.S1_at

Description tigr:9640.m00513
TID=OsAffx.7495.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0593011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g05900Os.8594.1.S1_at11/1112+2707478..2712514rac GTPase activating protein 1, putative, expressed
LOC_Os12g05909NANA12+2715585..2715720NA
LOC_Os12g05920Os.51064.1.S1_at9/1112+2723050..2725350expressed protein
LOC_Os12g05930OsAffx.7495.1.S1_at11/1112+2731573..2732169Leucine Rich Repeat family protein
LOC_Os12g05940OsAffx.8606.1.S1_s_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31603.1.S1_at11/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05940OsAffx.31255.1.S1_at1/1112+2736748..2739113transposon protein, putative, unclassified
LOC_Os12g05950OsAffx.19511.1.S1_at11/1112+2740006..2740426hypothetical protein
LOC_Os12g05960OsAffx.31604.1.S1_at11/1112+2743306..2744085hypothetical protein
LOC_Os12g05970OsAffx.7496.1.S1_at11/1112+2746577..2749107hypothetical protein
LOC_Os12g05980NANA12+2750933..2751430hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0008356biological_processasymmetric cell division
GO:0010103biological_processstomatal complex morphogenesis
GO:0005739cellular_componentmitochondrion
GO:0031225cellular_componentanchored to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004872molecular_functionreceptor activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7495.1.S1_at--753--9091Chr12:2732084..2732108 (25 bp)
TGCTGCTACCAGTGAACCTCACAAA
LOC_Os12g05930
OsAffx.7495.1.S1_at--487--2851Chr12:2732017..2732041 (25 bp)
AATGTCGGCCAGCTGGTTTTGGAAC
LOC_Os12g05930
OsAffx.7495.1.S1_at--53--2671Chr12:2731987..2732011 (25 bp)
AAGCCTACAATACCTTGACCTCAGT
LOC_Os12g05930
OsAffx.7495.1.S1_at--637--6911Chr12:2731951..2731975 (25 bp)
GTATGGGCAAATTCCGCACAAACTG
LOC_Os12g05930
OsAffx.7495.1.S1_at--488--8851Chr12:2731925..2731949 (25 bp)
TGATGACATCCCTACAATTCCTTGA
LOC_Os12g05930
OsAffx.7495.1.S1_at--700--3151Chr12:2731910..2731934 (25 bp)
AATTCCTTGATCTTTCGTCTAATGG
LOC_Os12g05930
OsAffx.7495.1.S1_at--1006--871Chr12:2731860..2731884 (25 bp)
ATGGCCACGGACCTTAGCAATCTAT
LOC_Os12g05930
OsAffx.7495.1.S1_at--836--6571Chr12:2731816..2731840 (25 bp)
GATTCGCTGGGCTCTCTTATACGGA
LOC_Os12g05930
OsAffx.7495.1.S1_at--671--1471Chr12:2731772..2731796 (25 bp)
AGAATCTGTCGTCTAATTGCTCGCC
LOC_Os12g05930
OsAffx.7495.1.S1_at--680--71Chr12:2731757..2731781 (25 bp)
ATTGCTCGCCCAATCAACTGAAGGA
LOC_Os12g05930
OsAffx.7495.1.S1_at--820--1691Chr12:2731638..2731662 (25 bp)
AGCCACTCTGTCAAATCTAACGTTC
LOC_Os12g05930
Target Sequence 
TGCTGCTACCAGTGAACCTCACAAACCTTGAGGTGCTGGATGCCTCCAGTAACTCCTTCGACCATCCAATGTCGGCCAGC
TGGTTTTGGAACATAACAAGCCTACAATACCTTGACCTCAGTTCAAATAGATTGTATGGGCAAATTCCGCACAAACTGAT
GATGACATCCCTACAATTCCTTGATCTTTCGTCTAATGGAGATGGTGACAAGAACATGGGCGTCATGGCCACGGACCTTA
GCAATCTATGCAGTTTGAATGTCCTGAAGATTCGCTGGGCTCTCTTATACGGAGACATAACTGAGATGTTTAAGAATCTG
TCGTCTAATTGCTCGCCCAATCAACTGAAGGAACTAGACCTCGGAGTAAACCAGTTAACTGGGACGCTACCAAAATGGAT
AGGGCAGTTAACGAGCTTGGTTAAACAAGATCTCAGGGGAAATACCAGCCACTCTGTCAAATCTAACGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis