Browse Element(s) Details


OsAffx.7500.1.S1_at

Description tigr:9640.m00550
TID=OsAffx.7500.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0629010/11hypothetical protein
LOC_Os07g406401/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06270Os.48434.1.A1_at2/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06270OsAffx.9699.1.S1_at1/1112+2981715..2992138retrotransposon protein, putative, unclassified, expressed
LOC_Os12g06280Os.22827.1.A1_at10/1112+2995187..2995807expressed protein
LOC_Os12g06280Os.22827.1.A1_x_at9/1112+2995187..2995807expressed protein
LOC_Os12g06290OsAffx.7500.1.S1_at10/1112+3006927..3008775hypothetical protein
LOC_Os12g06300Os.54296.1.S1_at9/1112+3012312..3014620hypothetical protein
LOC_Os12g06314NANA12+3020031..3020530NA
LOC_Os12g06330Os.48567.1.S1_at11/1112+3023062..3028392expressed protein
LOC_Os12g06340Os.27423.1.S1_x_at11/1112+3028600..3033637Associated with HOX family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7500.1.S1_at--1063--2531Chr12:3008424..3008552 (25 bp)
AACTCCACCGCGTGCCGGTTTGCGG
LOC_Os12g06290
OsAffx.7500.1.S1_at--292--7711Chr12:3008368..3008392 (25 bp)
GGGTGGCCATTCACGCCGTACTCGT
LOC_Os12g06290
OsAffx.7500.1.S1_at--577--4011Chr12:3007799..3007823 (25 bp)
CCTACGTGTACCACGCCAAGGAGGA
LOC_Os12g06290
OsAffx.7500.1.S1_at--331--4611Chr12:3007761..3007782 (22 bp)
GCGACCAAGGCCTCGTCGAGAGATG
LOC_Os12g06290
OsAffx.7500.1.S1_at--1126--4271NONE
CCTCGTCGAGAGATGGGAAAGCGTC
NONE
OsAffx.7500.1.S1_at--179--7631Chr12:3007127..3007151 (25 bp)
GGGAAAGCGTCCAATGATCTCCTCG
LOC_Os12g06290
OsAffx.7500.1.S1_at--395--4011Chr12:3007120..3007144 (25 bp)
CGTCCAATGATCTCCTCGTGGAGGA
LOC_Os12g06290
OsAffx.7500.1.S1_at--782--6411Chr12:3007112..3007136 (25 bp)
GATCTCCTCGTGGAGGAGCAGCAGA
LOC_Os12g06290
OsAffx.7500.1.S1_at--783--1511Chr12:3007093..3007117 (25 bp)
AGCAGAAGCAACCAGGACAAGGCGA
LOC_Os12g06290
OsAffx.7500.1.S1_at--586--4112Chr12:3007042..3007066 (25 bp)
CGAAGGCGAAGATCGAGCAGCAATG
LOC_Os12g06290
OsAffx.7500.1.S1_at--924--4491Chr12:3007011..3007035 (25 bp)
GCCGATGACCGGAACTGCCTCGTCG
LOC_Os12g06290
Target Sequence 
AACTCCACCGCGTGCCGGTTTGCGGGCAGGTGCTCGTGGCGTACGGCGGCGCGGCGGGGTGGCCATTCACGCCGTACTCG
TCGCCGGCGCAGTGGCAGGTCGCGGCCGGTCTCGTGAACGGCGGCGCGGTGGACCACCGGCGGCGTCTCGGGTCCCCGCC
GCCGAAGATGCGCGGCGGCGGCGGAGGTGGCACCGGCGTGTTCCTGCCGCGCACCTACGTGTACCACGCCAAGGAGGAGT
CGCCGGCGCCGGCGGCGACCAAGGCCTCGTCGAGAGATGGGAAAGCGTCCAATGATCTCCTCGTGGAGGAGCAGCAGAAG
CAACCAGGACAAGGCGAGGAGGAGGAGGAAGGGTCACCGGCGGCGAAGGCGAAGATCGAGCAGCAATGCCCGCCGCCGAT
GACCGGAACTGCCTCGTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis