Browse Element(s) Details


OsAffx.7515.1.S1_s_at

Description tigr:9640.m00678
TID=OsAffx.7515.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Sec61beta family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0749011/11Sec61beta family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g07470OsAffx.7514.1.S1_at9/1112+3695019..3698086hypothetical protein
LOC_Os12g07480OsAffx.31633.1.S1_s_at11/1112+3708751..3710537TCP family transcription factor containing protein, expressed
LOC_Os12g07490OsAffx.7515.1.S1_s_at11/1112+3717759..3719242Sec61beta family protein, expressed
LOC_Os12g07500Os.50888.1.S1_at11/1112+3722654..3725841expressed protein
LOC_Os12g07510OsAffx.31634.1.S1_at11/1112+3726841..3730984hypothetical protein
LOC_Os12g07510Os.51788.2.S1_at1/1112+3726841..3730984hypothetical protein
LOC_Os12g07520OsAffx.7516.1.S1_at11/1112+3738507..3741724Ribosome inactivating protein
LOC_Os12g07530Os.17850.1.S1_at11/1112+3742733..3748394expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0015031biological_processprotein transport
GO:0008565molecular_functionprotein transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7515.1.S1_s_at--629--1331Chr12:3718923..3718947 (25 bp)
AGAGGTGGCACCAGCACAATGCTTC
LOC_Os12g07490
OsAffx.7515.1.S1_s_at--569--4211Chr12:3718985..3719009 (25 bp)
CCCCAATGCTGTTCTGATCATGAGC
LOC_Os12g07490
OsAffx.7515.1.S1_s_at--458--691Chr12:3719004..3719028 (25 bp)
ATGAGCATCGGGTTTTTCGCGGTCG
LOC_Os12g07490
OsAffx.7515.1.S1_s_at--1104--10691Chr12:3719029..3719053 (25 bp)
TTGCCCTTCTCCATGTTTTCGGCAA
LOC_Os12g07490
OsAffx.7515.1.S1_s_at--1026--10371Chr12:3719044..3719068 (25 bp)
TTTTCGGCAAGCTATACCGTACCTC
LOC_Os12g07490
OsAffx.7515.1.S1_s_at--470--6971Chr12:3719062..3719086 (25 bp)
GTACCTCCTCCAACTAGGTTGACAA
LOC_Os12g07490
OsAffx.7515.1.S1_s_at--653--7911Chr12:3719078..3719102 (25 bp)
GGTTGACAATGCTATTATCCATGAC
LOC_Os12g07490
OsAffx.7515.1.S1_s_at--741--10011Chr12:3719103..3719127 (25 bp)
TAGCAGATTCAGTCAACAGAGGATT
LOC_Os12g07490
OsAffx.7515.1.S1_s_at--654--6531Chr12:3719124..3719148 (25 bp)
GATTTCGTTTGTAGAGTTCCTTCAA
LOC_Os12g07490
OsAffx.7515.1.S1_s_at--349--6951Chr12:3719134..3719158 (25 bp)
GTAGAGTTCCTTCAATGCATAGCAA
LOC_Os12g07490
OsAffx.7515.1.S1_s_at--140--5531Chr12:3719175..3719199 (25 bp)
GAAAAGTTTTCTGTTATCATCATAG
LOC_Os12g07490
Target Sequence 
AGAGGTGGCACCAGCACAATGCTTCAGTTCTACACTGAAGAGGCTGCTGGGTGCAAGATGTCCCCCAATGCTGTTCTGAT
CATGAGCATCGGGTTTTTCGCGGTCGTTGCCCTTCTCCATGTTTTCGGCAAGCTATACCGTACCTCCTCCAACTAGGTTG
ACAATGCTATTATCCATGACTAGCAGATTCAGTCAACAGAGGATTTCGTTTGTAGAGTTCCTTCAATGCATAGCAAATTG
CTATTCGATTATGAAAAGTTTTCTGTTATCATCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7515.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis