Browse Element(s) Details


OsAffx.7547.1.S1_at

Description tigr:9640.m00960
TID=OsAffx.7547.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1023011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10180OsAffx.19585.1.S1_at11/1112+5375855..5382028NB-ARC domain containing protein, expressed
LOC_Os12g10190Os.49409.1.S1_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190Os.49409.1.S1_s_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190OsAffx.19586.1.S1_at2/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10200Os.39074.1.A1_at11/1112+5390908..5393891expressed protein
LOC_Os12g10210NANA12+5394889..5395308hypothetical protein
LOC_Os12g10220Os.51603.1.S1_at11/1112+5398038..5400311expressed protein
LOC_Os12g10230OsAffx.7547.1.S1_at11/1112+5400799..5401182hypothetical protein
LOC_Os12g10240OsAffx.31677.1.S1_x_at5/1112+5410785..5411208amino acid carrier, putative
LOC_Os12g10250OsAffx.31678.3.S1_x_at11/1112+5414947..5416660zinc finger family protein, putative, expressed
LOC_Os12g10260OsAffx.31678.1.S1_at11/1112+5420044..5422532hAT family dimerisation domain containing protein
LOC_Os12g10260OsAffx.31678.3.S1_x_at1/1112+5420044..5422532hAT family dimerisation domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7547.1.S1_at--859--8251Chr12:5401127..5401151 (25 bp)
GGCACCAGAGCCTATCAGCCCAGAG
LOC_Os12g10230
OsAffx.7547.1.S1_at--14--4431Chr12:5401066..5401090 (25 bp)
GCCCATTAAGCCTCCAGACTCTAGA
LOC_Os12g10230
OsAffx.7547.1.S1_at--72--10051Chr12:5401045..5401069 (25 bp)
TAGAGGCTATCAGGCCCGCTTGATG
LOC_Os12g10230
OsAffx.7547.1.S1_at--273--4131Chr12:5401029..5401053 (25 bp)
CGCTTGATGCACCTGGCCTTCGGAG
LOC_Os12g10230
OsAffx.7547.1.S1_at--4--10831Chr12:5400985..5401009 (25 bp)
TTGGCCAAGATTACGGAGCGCTGAG
LOC_Os12g10230
OsAffx.7547.1.S1_at--624--4231Chr12:5400930..5400954 (25 bp)
CCGAGAGCGCAGTGGGCCGTAATAA
LOC_Os12g10230
OsAffx.7547.1.S1_at--987--7051Chr12:5400912..5400936 (25 bp)
GTAATAAATACGCACTACGCACCCG
LOC_Os12g10230
OsAffx.7547.1.S1_at--1020--4371Chr12:5400887..5400911 (25 bp)
CCAACCATATCTGGCGTCATTACAG
LOC_Os12g10230
OsAffx.7547.1.S1_at--777--7131Chr12:5400872..5400896 (25 bp)
GTCATTACAGGGACGGGCCAGCACA
LOC_Os12g10230
OsAffx.7547.1.S1_at--823--1491Chr12:5400853..5400877 (25 bp)
AGCACAGGCCACTACCCGGAAAGCA
LOC_Os12g10230
OsAffx.7547.1.S1_at--736--5552Chr05:12845466..12845488 (23 bp)
GAAAGCACGGCTTTGCCCGGGTAAT
NONE
Target Sequence 
GGCACCAGAGCCTATCAGCCCAGAGCCCATCAAACCCCCGGATCCAACCAAGGGCTCCAGAGCCCATTAAGCCTCCAGAC
TCTAGAGGCTATCAGGCCCGCTTGATGCACCTGGCCTTCGGAGCCAACCAAGGTCTTCGGAGTTGGCCAAGATTACGGAG
CGCTGAGGAAGCCCCAGGCCGGAGGCGAAGGCGGACCCCGAGAGCGCAGTGGGCCGTAATAAATACGCACTACGCACCCG
CCAACCATATCTGGCGTCATTACAGGGACGGGCCAGCACAGGCCACTACCCGGAAAGCACGGCTTTGCCCGGGTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7547.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis