Browse Element(s) Details


OsAffx.7575.4.A1_at

Description tigr:9629.m07382
TID=OsAffx.7575.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7443011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein
LOC_Os01g74390Os.35344.18.S1_x_at5/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390Os.35344.3.S1_x_at3/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390OsAffx.22940.5.S1_x_at1/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74400NANA1+43417397..43419265transposon protein, putative, Mutator sub-class
LOC_Os01g74410Os.408.1.S1_a_at11/111+43423249..43424821Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74430OsAffx.7575.4.A1_at11/111+43431289..43431711hypothetical protein
LOC_Os01g74440NANA1+43439629..43440255SRF-type transcription factor family protein
LOC_Os01g74450Os.7475.1.S1_at11/111+43442595..43444069Aquaporin TIP1.1, putative, expressed
LOC_Os01g74460Os.52442.1.A1_at10/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74460OsAffx.21919.1.S1_at2/111+43447015..43452373SAND family protein, expressed
LOC_Os01g74470Os.25416.1.A1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_at11/111+43452847..43461350ABC transporter family protein, putative, expressed
LOC_Os01g74470Os.52865.1.S1_x_at11/111+43452847..43461350ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7575.4.A1_at--23--5712Chr01:43431400..43431424 (25 bp)
GACTCCCTCAGTCTGGGCACGTCGG
LOC_Os01g74430
OsAffx.7575.4.A1_at--11--1711Chr01:43431455..43431479 (25 bp)
ACCACAGCACGTCGGCGAATAGCGG
LOC_Os01g74430
OsAffx.7575.4.A1_at--1019--3091Chr01:43431472..43431496 (25 bp)
AATAGCGGCGTGTACCTATCGGCGA
LOC_Os01g74430
OsAffx.7575.4.A1_at--937--6971Chr01:43431483..43431507 (25 bp)
GTACCTATCGGCGACCAGCAATGTC
LOC_Os01g74430
OsAffx.7575.4.A1_at--497--5851Chr01:43431495..43431519 (25 bp)
GACCAGCAATGTCACGCACAGGCGA
LOC_Os01g74430
OsAffx.7575.4.A1_at--981--751Chr01:43431503..43431527 (25 bp)
ATGTCACGCACAGGCGACACGTCGT
LOC_Os01g74430
OsAffx.7575.4.A1_at--207--7111Chr01:43431532..43431556 (25 bp)
GTCAGGCACCTTCGTGGTCTTGGAT
LOC_Os01g74430
OsAffx.7575.4.A1_at--711--8592Chr01:43431546..43431570 (25 bp)
TGGTCTTGGATTGCGAACAGGACGA
LOC_Os01g74430
OsAffx.7575.4.A1_at--1065--9131Chr01:43431557..43431581 (25 bp)
TGCGAACAGGACGAGGAAGCGCTTC
LOC_Os01g74430
OsAffx.7575.4.A1_at--84--4151Chr01:43431644..43431668 (25 bp)
CGCTGGGCGCTAAAGATGACCGAGA
LOC_Os01g74430
OsAffx.7575.4.A1_at--88--1311Chr01:43431657..43431681 (25 bp)
AGATGACCGAGATGAGGCCGCTCAC
LOC_Os01g74430
Target Sequence 
GACTCCCTCAGTCTGGGCACGTCGGCGACCGCCACCGCCACCGAGAACGCCTCCCACCACAGCACGTCGGCGAATAGCGG
CGTGTACCTATCGGCGACCAGCAATGTCACGCACAGGCGACACGTCGTCACCGTCAGGCACCTTCGTGGTCTTGGATTGC
GAACAGGACGAGGAAGCGCTTCGGGAGGTGGAGCGCAACCGGAACCACAAGCGGCAGTGGGCTGCCCAGGGGCTGGCGGG
GCGGCGCTGGGCGCTAAAGATGACCGAGATGAGGCCGCTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7575.4.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis