Browse Element(s) Details


OsAffx.7603.1.S1_at

Description tigr:9640.m01498
TID=OsAffx.7603.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1541011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g15370OsAffx.31751.1.S1_at10/1112+8770406..8772488hypothetical protein
LOC_Os12g15390OsAffx.31752.1.S1_at11/1112+8785203..8785537hypothetical protein
LOC_Os12g15400Os.53787.1.S1_at11/1112+8789746..8794641Esterase, putative, expressed
LOC_Os12g15410OsAffx.7603.1.S1_at11/1112+8795759..8796070hypothetical protein
LOC_Os12g15420Os.56258.1.S1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A1_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15420Os.25091.1.A2_at11/1112+8799013..8805146Pre-mRNA splicing factor cwc22, putative, expressed
LOC_Os12g15430OsAffx.30564.2.S1_s_at4/1112+8811879..8812148hypothetical protein
LOC_Os12g15430OsAffx.30564.1.S1_s_at2/1112+8811879..8812148hypothetical protein
LOC_Os12g15440OsAffx.31753.4.S1_s_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15440OsAffx.31753.4.S1_at11/1112+8813040..8813525AC transposase, putative
LOC_Os12g15450OsAffx.19687.1.S1_at11/1112+8816747..8820291expressed protein
LOC_Os12g15450OsAffx.19687.1.S1_s_at11/1112+8816747..8820291expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7603.1.S1_at--1082--5771Chr12:8795792..8795816 (25 bp)
GACGACTCCGGGTCCGACTGCGAGA
LOC_Os12g15410
OsAffx.7603.1.S1_at--408--7251Chr12:8795803..8795827 (25 bp)
GTCCGACTGCGAGACCGATTCGGAA
LOC_Os12g15410
OsAffx.7603.1.S1_at--136--1091Chr12:8795865..8795889 (25 bp)
AGGGCGGTGCTCTGCGCGTCATCTA
LOC_Os12g15410
OsAffx.7603.1.S1_at--1001--7311Chr12:8795871..8795895 (25 bp)
GTGCTCTGCGCGTCATCTACAACGG
LOC_Os12g15410
OsAffx.7603.1.S1_at--515--2571Chr12:8795891..8795915 (25 bp)
AACGGCTTCTACTTCAGGTGCCTGG
LOC_Os12g15410
OsAffx.7603.1.S1_at--29--9651Chr12:8795904..8795928 (25 bp)
TCAGGTGCCTGGTCTGCCCCGGCAA
LOC_Os12g15410
OsAffx.7603.1.S1_at--4--9151Chr12:8795918..8795942 (25 bp)
TGCCCCGGCAAGATGGCGTCCCGGT
LOC_Os12g15410
OsAffx.7603.1.S1_at--641--4191Chr12:8795937..8795961 (25 bp)
CCCGGTGGAATAGCATGGAGGATAT
LOC_Os12g15410
OsAffx.7603.1.S1_at--769--7611Chr12:8795978..8796002 (25 bp)
GGGAAGGCGAACTCCTCGAGCCTGA
LOC_Os12g15410
OsAffx.7603.1.S1_at--770--4091Chr12:8795985..8796009 (25 bp)
CGAACTCCTCGAGCCTGAGGGAGGA
LOC_Os12g15410
OsAffx.7603.1.S1_at--1128--8051Chr12:8796007..8796031 (25 bp)
GGAGAACAAGAAGTGGCAGCGCCAC
LOC_Os12g15410
Target Sequence 
GACGACTCCGGGTCCGACTGCGAGACCGATTCGGAAGATGACCGGCGCCGCGGCTACCGTCGGCCGGTCCCCCAGGGCGG
TGCTCTGCGCGTCATCTACAACGGCTTCTACTTCAGGTGCCTGGTCTGCCCCGGCAAGATGGCGTCCCGGTGGAATAGCA
TGGAGGATATCAAGAACCACACCGTGGGGAAGGCGAACTCCTCGAGCCTGAGGGAGGAGAACAAGAAGTGGCAGCGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7603.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis