Browse Element(s) Details


OsAffx.7633.1.S1_at

Description tigr:9640.m01844
TID=OsAffx.7633.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1871010/11hypothetical protein
LOC_Os08g301401/11hypothetical protein
LOC_Os04g055401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g132501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18670OsAffx.19732.1.S1_at11/1112+10787964..10788434hypothetical protein
LOC_Os12g18680NANA12+10791341..10791640hypothetical protein
LOC_Os12g18690OsAffx.19733.1.S1_at11/1112+10797037..10799564hypothetical protein
LOC_Os12g18700OsAffx.19734.1.S1_at9/1112+10804491..10806388expressed protein
LOC_Os12g18710OsAffx.7633.1.S1_at10/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.25317.1.S1_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18710OsAffx.20972.1.S1_x_at1/1112+10812452..10814218hypothetical protein
LOC_Os12g18729Os.22682.1.S1_a_at11/1112+10819906..10831099expressed protein
LOC_Os12g18729Os.53843.1.S1_at11/1112+10819906..10831099expressed protein
LOC_Os12g18750OsAffx.2602.1.S1_at11/1112+10838903..10840765hypothetical protein
LOC_Os12g18750Os.5300.1.S1_at1/1112+10838903..10840765hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7633.1.S1_at--435--1913Chr12:11430583..11430607 (25 bp)
ATTTCTGGCGCCATTGCTGGAATGA
NONE
OsAffx.7633.1.S1_at--44--2011NONE
ACTACACTTCTCTGGCCGGTATGAT
NONE
OsAffx.7633.1.S1_at--1081--8691Chr12:10813261..10813285 (25 bp)
TGTCCAAAATGCTCTGTAACCGCCA
LOC_Os12g18710
OsAffx.7633.1.S1_at--359--2671Chr12:10813291..10813315 (25 bp)
AAGCGATCTGGAGCATCCACGTGTA
LOC_Os12g18710
OsAffx.7633.1.S1_at--783--7051Chr12:10813313..10813337 (25 bp)
GTAAGGCTAGCCTAATCCGACGCCA
LOC_Os12g18710
OsAffx.7633.1.S1_at--416--871Chr12:10813340..10813364 (25 bp)
AGGCTGAACCTAGCCGGCTTAGCAG
LOC_Os12g18710
OsAffx.7633.1.S1_at--271--9233Chr12:10813368..10813392 (25 bp)
TCCAGATTTGGCAGGGTCACTGACA
LOC_Os12g18710
OsAffx.7633.1.S1_at--115--511Chr12:10813998..10814022 (25 bp)
ATCGTGGAGCGAGATGCGGCTTTAC
LOC_Os12g18710
OsAffx.7633.1.S1_at--693--8271Chr12:10814015..10814039 (25 bp)
GGCTTTACGCCGTGCGATTTGCAGG
LOC_Os12g18710
OsAffx.7633.1.S1_at--388--5611Chr12:10814075..10814099 (25 bp)
GACAACGCCCTCTTGAGTTTGAATG
LOC_Os12g18710
OsAffx.7633.1.S1_at--519--1931Chr12:10814147..10814171 (25 bp)
ACGGTTGCTAACTCATTTGGTCAGA
LOC_Os12g18710
Target Sequence 
ATTTCTGGCGCCATTGCTGGAATGACTATTTCTAGTAATGTCGTTAAGAAATACCAACACTACACTTCTCTGGCCGGTAT
GATGGTTGTAACTGATGCGAATTGTCCAAAATGCTCTGTAACCGCCATCAGCAAGCGATCTGGAGCATCCACGTGTAAGG
CTAGCCTAATCCGACGCCACCAGGCTGAACCTAGCCGGCTTAGCAGGCCTCCAGATTTGGCAGGGTCACTGACAGTTTGG
GGTCCAATTGAGCTCTACAGGAGGGGAAAAGGAGAGGAAAAGGCACGGGGGTGCCATTTACAGGCTCGGGAGGCAGATTC
AAGGCTGGGGAAAGGCGGTAGCCGGTGGAGGAGGAGGGGGCATCGTGGAGCGAGATGCGGCTTTACGCCGTGCGATTTGC
AGGGGAGAGTTGGGAAAGAGGTGGAGGACGCAGGTGGCGACAACGCCCTCTTGAGTTTGAATGTAAGAGCGGGAAAGGAG
AGGCACGGGAACGATGTCGTCATGGGGGGAACGGTTGCTAACTCATTTGGTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7633.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis