Browse Element(s) Details


OsAffx.7651.1.S1_at

Description tigr:9640.m02057
TID=OsAffx.7651.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2181011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21780OsAffx.22368.1.S1_x_at1/1112+12247748..12253875retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g21789OsAffx.31826.1.S1_x_at11/1112+12262068..12264856glycosyl hydrolase family protein 43, putative, expressed
LOC_Os12g21789Os.23678.1.A1_at11/1112+12262068..12264856glycosyl hydrolase family protein 43, putative, expressed
LOC_Os12g21798Os.4690.1.S1_at11/1112+12267896..1227170540S ribosomal protein S3a, putative, expressed
LOC_Os12g21810OsAffx.7651.1.S1_at11/1112+12273945..12275854hypothetical protein
LOC_Os12g21810Os.50737.1.S1_at1/1112+12273945..12275854hypothetical protein
LOC_Os12g21820OsAffx.19542.3.S1_x_at7/1112+12279169..12284086retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21830NANA12+12285139..12290198retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g21840NANA12+12296279..12296542hypothetical protein
LOC_Os12g21850OsAffx.7652.1.S1_at11/1112+12300816..12301400SRF-type transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7651.1.S1_at--897--6751Chr12:12274085..12274109 (25 bp)
GTTAACGCACTGATGGTGATTTTGA
LOC_Os12g21810
OsAffx.7651.1.S1_at--235--5111Chr12:12274079..12274103 (25 bp)
GCACTGATGGTGATTTTGATGATAA
LOC_Os12g21810
OsAffx.7651.1.S1_at--1107--10251Chr12:12274065..12274089 (25 bp)
TTTGATGATAACACCCGCTCAAGGT
LOC_Os12g21810
OsAffx.7651.1.S1_at--1115--8751Chr12:12274060..12274084 (25 bp)
TGATAACACCCGCTCAAGGTGGCTG
LOC_Os12g21810
OsAffx.7651.1.S1_at--522--7671Chr12:12274035..12274059 (25 bp)
GGGTTTTGTTGTTAGGGATACTGAT
LOC_Os12g21810
OsAffx.7651.1.S1_at--217--8811Chr12:12274029..12274053 (25 bp)
TGTTGTTAGGGATACTGATGGCCAG
LOC_Os12g21810
OsAffx.7651.1.S1_at--774--871Chr12:12274012..12274036 (25 bp)
ATGGCCAGGTGGTTGAAGCAGATGC
LOC_Os12g21810
OsAffx.7651.1.S1_at--563--5291Chr12:12273985..12274009 (25 bp)
GAATGGAAGCTTATCGCACGGCTCT
LOC_Os12g21810
OsAffx.7651.1.S1_at--472--851Chr12:12273983..12274007 (25 bp)
ATGGAAGCTTATCGCACGGCTCTTT
LOC_Os12g21810
OsAffx.7651.1.S1_at--986--2691Chr12:12273979..12274003 (25 bp)
AAGCTTATCGCACGGCTCTTTTTTA
LOC_Os12g21810
OsAffx.7651.1.S1_at--370--10411Chr12:12273975..12273999 (25 bp)
TTATCGCACGGCTCTTTTTTATGCT
LOC_Os12g21810
Target Sequence 
GTTAACGCACTGATGGTGATTTTGATGATAACACCCGCTCAAGGTGGCTGGGGTTTTGTTGTTAGGGATACTGATGGCCA
GGTGGTTGAAGCAGATGCTGGAATGGAAGCTTATCGCACGGCTCTTTTTTATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis