Browse Element(s) Details


OsAffx.766.1.S1_at

Description gb:NM_192983.1
DB_XREF= gi:34913049
GEN=P0013G02.15
TID=OsAffx.766.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0013G02.15 (P0013G02.15), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g383303/11expressed protein
LOC_Os01g397003/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38300OsAffx.31479.1.S1_x_at11/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38300OsAffx.31479.4.S1_x_at9/1111+22171353..22177438AT hook motif-containing protein, putative
LOC_Os11g38310OsAffx.31479.5.S1_x_at11/1111+22179008..22183269hypothetical protein
LOC_Os11g38320Os.20602.2.S1_x_at11/1111+22193303..22195477hAT family dimerisation domain containing protein
LOC_Os11g38330Os.6094.1.S1_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330Os.6094.2.A1_s_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.7337.1.S1_at11/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.766.1.S1_at3/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.17065.1.A1_s_at1/1111+22196370..22202867expressed protein
LOC_Os11g38330OsAffx.17065.1.A1_at1/1111+22196370..22202867expressed protein
LOC_Os11g38340OsAffx.7338.1.S1_at11/1111+22207571..22210922hypothetical protein
LOC_Os11g38350NANA11+22211706..22213103retrotransposon protein, putative, unclassified
LOC_Os11g38360NANA11+22214002..22217899retrotransposon protein, putative, unclassified
LOC_Os11g38370OsAffx.32072.2.S1_x_at5/1111+22226290..22226544hypothetical protein
LOC_Os11g38370OsAffx.32072.1.S1_x_at4/1111+22226290..22226544hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.766.1.S1_at--444--1931Chr01:22717805..22717829 (25 bp)
ACGGCACCGGCTACGATGTTCGGAT
NONE
OsAffx.766.1.S1_at--528--1771Chr01:22717810..22717834 (25 bp)
ACCGGCTACGATGTTCGGATCTAGA
NONE
OsAffx.766.1.S1_at--773--431Chr01:22717828..22717852 (25 bp)
ATCTAGAGCCGGTGAGCTCGGATCC
NONE
OsAffx.766.1.S1_at--418--8391Chr01:22717942..22717966 (25 bp)
GGCGACGGCGCGTGCTACACGACAC
NONE
OsAffx.766.1.S1_at--1128--7211Chr01:22717953..22717977 (25 bp)
GTGCTACACGACACCAGGCCGGGCG
NONE
OsAffx.766.1.S1_at--1072--10852Chr11:22198507..22198531 (25 bp)
TTGGCCGGATCTGGTACTTCCACCG
LOC_Os11g38330
OsAffx.766.1.S1_at--962--6393Chr11:22198514..22198565 (25 bp)
GATCTGGTACTTCCACCGGCAGCGG
LOC_Os11g38330
OsAffx.766.1.S1_at--427--5834Chr11:22198702..22198873 (25 bp)
GACCTGCTGCGGCTAGGCTGCTTCC
LOC_Os11g38330
OsAffx.766.1.S1_at--868--10092Chr01:22718387..22718411 (25 bp)
TAGGCTGCTTCCAGTCATTGCCGGG
LOC_Os01g39700
OsAffx.766.1.S1_at--56--10851Chr01:22718446..22718470 (25 bp)
TTGGATTCCGGCGTTCTATCTCGTT
LOC_Os01g39700
OsAffx.766.1.S1_at--162--6731Chr01:22718458..22718482 (25 bp)
GTTCTATCTCGTTGTTCGTCGGCCG
LOC_Os01g39700
Target Sequence 
ACGGCACCGGCTACGATGTTCGGATCTAGAGCCGGTGAGCTCGGATCCGGCCCTCGCTTGGCGGCAGCGAACCTACGAGG
GGCTGGCGGGATGGTGGCGGCGTTGGCGTGAGCTACGCGACGACGTGGCCGGGCGGCGGCGACGGCGCGTGCTACACGAC
ACCAGGCCGGGCGGTGGCGACGGCGACGAGCCCAGGCCAGCGCGTGGTGAGCTCGGATCCGGCCCTCCCTTGGCCGGATC
TGGTACTTCCACCGGCAGCGGCGAGCCGACGAGGGACTGGCGAGACGGCGGTGGGCGGCGGCCCTCGATCCCGCAGCAAC
GTCGAGGCCGGGCGGCGGCGACGATGGGCTTCTCCGGCGCGGGCTCGTCGGCGACGACGGCTGCTCTGGCGCCGGCTGCC
ACGGACCCGGCCGGGGGCTGCCGACCTGCTGCGGCTAGGCTGCTTCCAGTCATTGCCGGGGAGCTCCTTGGTGTGGTAGG
GGTGGCGTGCGGAGTTGGATTCCGGCGTTCTATCTCGTTGTTCGTCGGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.766.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis