Browse Element(s) Details


OsAffx.7706.1.S1_at

Description tigr:9640.m02547
TID=OsAffx.7706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g029101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02840NANA9+1331084..1336147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02850OsAffx.17544.1.S1_at11/119+1336310..1337153hypothetical protein
LOC_Os09g02860OsAffx.29696.1.S1_at11/119+1340563..1341235hypothetical protein
LOC_Os09g02870Os.47463.1.S1_x_at6/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02870Os.14491.2.S1_x_at4/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02880OsAffx.29697.1.S1_at10/119+1351117..1352234hypothetical protein
LOC_Os09g02890OsAffx.17545.1.S1_at11/119+1353909..1355501AC transposase, putative
LOC_Os09g02900NANA9+1356426..1358374transposon protein, putative, Mutator sub-class
LOC_Os09g02910OsAffx.6157.2.S1_at10/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.30422.1.S1_x_at4/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.2296.1.S1_x_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.30422.2.S1_x_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02910OsAffx.7706.1.S1_at1/119+1360120..1368902hypothetical protein
LOC_Os09g02920OsAffx.29698.1.S1_at11/119+1371217..1373733hypothetical protein
LOC_Os09g02920OsAffx.22250.2.S1_x_at1/119+1371217..1373733hypothetical protein
LOC_Os09g02930NANA9+1374529..1376209retrotransposon protein, putative, unclassified
LOC_Os09g02940OsAffx.16111.1.S1_at1/119+1376970..1377983retrotransposon protein, putative, unclassified
LOC_Os09g02940OsAffx.20615.1.S1_at1/119+1376970..1377983retrotransposon protein, putative, unclassified
LOC_Os09g02950NANA9+1380149..1387439retrotransposon protein, putative, unclassified
LOC_Os09g02960NANA9+1389987..1394882retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7706.1.S1_at--286--8613Chr12:15540187..15540211 (25 bp)
TGGTGAGGTCACAGGCCACCGGATC
NONE
OsAffx.7706.1.S1_at--640--6372Chr12:15541024..15541043 (20 bp)
GATCCGTGGCATCCGTTGAAATACA
NONE
OsAffx.7706.1.S1_at--411--2092Chr12:15541076..15541100 (25 bp)
ACATAAGTACTTCGACTGATCCATA
NONE
OsAffx.7706.1.S1_at--477--5712Chr12:15541089..15541113 (25 bp)
GACTGATCCATATGAGTCGACTATT
NONE
OsAffx.7706.1.S1_at--1047--692Chr12:15541100..15541124 (25 bp)
ATGAGTCGACTATTACAAGGTGTAC
NONE
OsAffx.7706.1.S1_at--995--7432Chr12:15541119..15541143 (25 bp)
GTGTACAAACTCCTCTATGACCAAT
NONE
OsAffx.7706.1.S1_at--402--5852Chr12:15541137..15541161 (25 bp)
GACCAATACACATGTACGTTTTGCA
NONE
OsAffx.7706.1.S1_at--666--1872Chr12:15541152..15541176 (25 bp)
ACGTTTTGCAAGTACCACGGTCATC
NONE
OsAffx.7706.1.S1_at--363--1932Chr12:15541168..15541192 (25 bp)
ACGGTCATCTTCTACATGTTTCCAG
NONE
OsAffx.7706.1.S1_at--973--432Chr12:15541174..15541198 (25 bp)
ATCTTCTACATGTTTCCAGTGCTGA
NONE
OsAffx.7706.1.S1_at--95--2112Chr12:15541181..15541205 (25 bp)
ACATGTTTCCAGTGCTGAACAAAAG
NONE
Target Sequence 
TGGTGAGGTCACAGGCCACCGGATCCGTGGCATCCGTTGAAATACATATAGAAAAGAAGATACTGCAGAGGAAGGAAAAC
ATAAGTACTTCGACTGATCCATATGAGTCGACTATTACAAGGTGTACAAACTCCTCTATGACCAATACACATGTACGTTT
TGCAAGTACCACGGTCATCTTCTACATGTTTCCAGTGCTGAACAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis