Browse Element(s) Details


OsAffx.7764.1.S1_at

Description tigr:9640.m03132
TID=OsAffx.7764.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to zinc finger transcription factor WRKY1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3225011/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g32219NANA12+19421573..19422150NA
LOC_Os12g32230Os.26913.1.S1_at10/1112+19423639..19428120Molybdenum cofactor biosynthesis protein 1 A, putative, expressed
LOC_Os12g32240Os.10978.1.S1_at11/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32240Os.57450.1.S1_x_at9/1112+19434154..19437114Eukaryotic translation initiation factor 5A-2, putative, expressed
LOC_Os12g32250OsAffx.7764.1.S1_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32250Os.17759.1.A1_s_at11/1112+19445198..19450073WRKY DNA binding domain containing protein, expressed
LOC_Os12g32260OsAffx.31975.1.S1_at11/1112+19452554..19453847expressed protein
LOC_Os12g32260Os.15807.1.S1_s_at11/1112+19452554..19453847expressed protein
LOC_Os12g32280OsAffx.7765.1.S1_at4/1112+19463053..19464159SWIB/MDM2 domain containing protein, expressed
LOC_Os12g32290OsAffx.31976.1.S1_at11/1112+19466662..19467473expressed protein
LOC_Os12g32290OsAffx.31976.1.S1_s_at11/1112+19466662..19467473expressed protein
LOC_Os12g32300OsAffx.31977.1.S1_at11/1112+19472219..19472560hypothetical protein
LOC_Os12g32310OsAffx.7766.1.S1_at10/1112+19473878..19475306hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7764.1.S1_at--612--9131Chr12:19449473..19449497 (25 bp)
TGCGGCCCCTTCAAGCAGTGCACAA
LOC_Os12g32250
OsAffx.7764.1.S1_at--589--4531Chr12:19449477..19449501 (25 bp)
GCCCCTTCAAGCAGTGCACAACAGA
LOC_Os12g32250
OsAffx.7764.1.S1_at--294--3271Chr12:19449495..19449519 (25 bp)
CAACAGAATATGCAGAATTTGTCTA
LOC_Os12g32250
OsAffx.7764.1.S1_at--302--5811Chr12:19449628..19449652 (25 bp)
GACCCCGGTTGCTGAAGTGGCACAC
LOC_Os12g32250
OsAffx.7764.1.S1_at--1010--4191Chr12:19449631..19449655 (25 bp)
CCCGGTTGCTGAAGTGGCACACTGG
LOC_Os12g32250
OsAffx.7764.1.S1_at--520--7911Chr12:19449634..19449658 (25 bp)
GGTTGCTGAAGTGGCACACTGGTAT
LOC_Os12g32250
OsAffx.7764.1.S1_at--482--10711Chr12:19449636..19449660 (25 bp)
TTGCTGAAGTGGCACACTGGTATTT
LOC_Os12g32250
OsAffx.7764.1.S1_at--596--2871Chr12:19449642..19449666 (25 bp)
AAGTGGCACACTGGTATTTGGTTGA
LOC_Os12g32250
OsAffx.7764.1.S1_at--737--7531Chr12:19449644..19449668 (25 bp)
GTGGCACACTGGTATTTGGTTGATT
LOC_Os12g32250
OsAffx.7764.1.S1_at--614--8231Chr12:19449646..19449670 (25 bp)
GGCACACTGGTATTTGGTTGATTTC
LOC_Os12g32250
OsAffx.7764.1.S1_at--307--3311Chr12:19449648..19449672 (25 bp)
CACACTGGTATTTGGTTGATTTCTT
LOC_Os12g32250
Target Sequence 
TGCGGCCCCTTCAAGCAGTGCACAACAGAATATGCAGAATTTGTCTAGTAATCAAGCTTCACTTACAATGGCAGACTTCA
ACAACATTAACCAGAGGCCAATTGGGGTCTTACAGTTCAAAAGCGAAGAATAACACCGTCAACTGACTTTCTTGGGACCC
CGGTTGCTGAAGTGGCACACTGGTATTTGGTTGATTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis