Browse Element(s) Details


OsAffx.7782.1.S1_at

Description tigr:9640.m03269
TID=OsAffx.7782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3384011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33790NANA12+20354629..20355279hypothetical protein
LOC_Os12g33800Os.24831.1.S1_x_at10/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.24831.3.S1_x_at7/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.53142.1.S1_at3/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.24831.3.S1_s_at1/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33800Os.24831.4.S1_x_at1/1112+20357202..20359807retrotransposon protein, putative, unclassified
LOC_Os12g33810NANA12+20360238..20362652retrotransposon protein, putative, unclassified
LOC_Os12g33820Os.40855.5.S1_x_at2/1112+20367061..20369732hypothetical protein
LOC_Os12g33830OsAffx.32007.2.S1_at11/1112+20371729..20373002F-box domain containing protein
LOC_Os12g33840OsAffx.7782.1.S1_at11/1112+20376273..20376777hypothetical protein
LOC_Os12g33850OsAffx.30013.5.S1_x_at2/1112+20377286..20381921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33850Os.56292.1.S1_x_at1/1112+20377286..20381921retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33859NANA12+20384660..20385223hypothetical protein
LOC_Os12g33870NANA12+20388639..20390072retrotransposon protein, putative, unclassified
LOC_Os12g33879NANA12+20392879..20393442hypothetical protein
LOC_Os12g33890NANA12+20400074..20402999retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7782.1.S1_at--498--10671Chr12:20376304..20376328 (25 bp)
TTCCTACTGTCACGACCTTGAAGAT
LOC_Os12g33840
OsAffx.7782.1.S1_at--468--8631Chr12:20376346..20376370 (25 bp)
TGGGTGGGCATTCCATAAGTCCAAC
LOC_Os12g33840
OsAffx.7782.1.S1_at--624--3251Chr12:20376367..20376391 (25 bp)
CAACCCTAGCCAGATTTCTTTCAAA
LOC_Os12g33840
OsAffx.7782.1.S1_at--943--5231Chr12:20376400..20376424 (25 bp)
GAATCGAACAACTCTCCATTCACAT
LOC_Os12g33840
OsAffx.7782.1.S1_at--540--811Chr12:20376594..20376614 (21 bp)
ATGGGTGCTTAGTGTGCTCAGATCC
LOC_Os12g33840
OsAffx.7782.1.S1_at--508--1291Chr12:20376609..20376633 (25 bp)
AGATCCTCTCTGTCTATGTGGCCAA
LOC_Os12g33840
OsAffx.7782.1.S1_at--686--7151Chr12:20376620..20376644 (25 bp)
GTCTATGTGGCCAACCGGAGGATTG
LOC_Os12g33840
OsAffx.7782.1.S1_at--519--8091Chr12:20376648..20376672 (25 bp)
GGACCAGATGATCCCATTAGAGCAT
LOC_Os12g33840
OsAffx.7782.1.S1_at--220--2091Chr12:20376680..20376704 (25 bp)
ACATCGAGATCCGTGGGTTTGCGCC
LOC_Os12g33840
OsAffx.7782.1.S1_at--561--6291Chr12:20376712..20376736 (25 bp)
GATGACCGAAAACGGCTCGTGCGAC
LOC_Os12g33840
OsAffx.7782.1.S1_at--480--2571Chr12:20376722..20376746 (25 bp)
AACGGCTCGTGCGACTACTGTTAAA
LOC_Os12g33840
Target Sequence 
TTCCTACTGTCACGACCTTGAAGATTAAAGCGAGGGCATGGATGGGTGGGCATTCCATAAGTCCAACCCTAGCCAGATTT
CTTTCAAAGTGTGAAAGAATCGAACAACTCTCCATTCACATCCAGGATGGGTGCTTAGTGTGCTCAGATCCTCTCTGTCT
ATGTGGCCAACCGGAGGATTGGGAGGACCAGATGATCCCATTAGAGCATCTGAAGAACATCGAGATCCGTGGGTTTGCGC
CCTTTAAAGATGACCGAAAACGGCTCGTGCGACTACTGTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis