Browse Element(s) Details


OsAffx.7796.1.S1_at

Description tigr:9640.m03423
TID=OsAffx.7796.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3540010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35364OsAffx.14791.1.S1_at1/1112+21470164..21470771hypothetical protein
LOC_Os12g35370OsAffx.22421.2.S1_at3/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35370OsAffx.22421.4.S1_x_at1/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35370Os.26886.3.S1_x_at1/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35370OsAffx.22421.1.S1_at1/1112+21472142..21475327transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35380Os.27435.1.S1_x_at2/1112+21478636..21482203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35380Os.51856.1.S2_x_at1/1112+21478636..21482203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35380Os.46334.1.S1_x_at1/1112+21478636..21482203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35380Os.51856.1.S2_at1/1112+21478636..21482203transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g35390NANA12+21486583..21487042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g35400OsAffx.7796.1.S1_at10/1112+21495264..21499408hypothetical protein
LOC_Os12g35410OsAffx.19975.1.S1_at11/1112+21499734..21505180AT hook motif-containing protein, putative
LOC_Os12g35410Os.27102.1.S1_x_at1/1112+21499734..21505180AT hook motif-containing protein, putative
LOC_Os12g35420OsAffx.7797.1.S1_at11/1112+21508424..21508750hypothetical protein
LOC_Os12g35430Os.53320.2.S1_s_at6/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35430Os.53320.1.S1_at5/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35430Os.53320.1.S1_s_at5/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35430Os.53320.2.S1_x_at4/1112+21509799..21512827transposon protein, putative, Mutator sub-class
LOC_Os12g35440OsAffx.32035.1.S1_at11/1112+21515914..21516225hypothetical protein
LOC_Os12g35450NANA12+21521436..21521825hypothetical protein
LOC_Os12g35460Os.53119.1.S1_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.52319.1.S1_x_at11/1112+21523971..21534835AT hook motif-containing protein, putative, expressed
LOC_Os12g35460Os.16539.1.S1_at1/1112+21523971..21534835AT hook motif-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7796.1.S1_at--175--691NONE
ATGACCCTGTTGAGGCTTCGATTTA
NONE
OsAffx.7796.1.S1_at--174--7511Chr12:21496419..21496443 (25 bp)
GTGGTATCGTTCCTGCCAGAAGTGC
LOC_Os12g35400
OsAffx.7796.1.S1_at--277--2231Chr12:21496363..21496387 (25 bp)
ACAAGTGCGGCAGCTGTTCTTGGAT
LOC_Os12g35400
OsAffx.7796.1.S1_at--850--2211Chr12:21496235..21496259 (25 bp)
ACAAGCTAGCACTCACAGCAGGTGA
LOC_Os12g35400
OsAffx.7796.1.S1_at--475--351Chr12:21496202..21496226 (25 bp)
ATAACGCCGAGTTTATCCTCTTTGG
LOC_Os12g35400
OsAffx.7796.1.S1_at--756--10791Chr12:21496181..21496205 (25 bp)
TTGGGAAAACGGCTCAACGCCTCGT
LOC_Os12g35400
OsAffx.7796.1.S1_at--228--1831Chr12:21496165..21496189 (25 bp)
ACGCCTCGTGCGGAAGCCAATTGAA
LOC_Os12g35400
OsAffx.7796.1.S1_at--704--8171Chr12:21496061..21496085 (25 bp)
GGAACGTCATCATCACAGAGAGCTC
LOC_Os12g35400
OsAffx.7796.1.S1_at--388--1411Chr12:21495555..21495579 (25 bp)
AGACTTTAAGCCCAGTTGCTCCTTC
LOC_Os12g35400
OsAffx.7796.1.S1_at--1017--10591Chr12:21495525..21495548 (24 bp)
TTCTGCCACTACCTCCAGGAAGAGA
LOC_Os12g35400
OsAffx.7796.1.S1_at--395--10571Chr12:21495416..21495440 (25 bp)
TTCTCAGACAACACCACCAGTTAAG
LOC_Os12g35400
Target Sequence 
ATGACCCTGTTGAGGCTTCGATTTATAACCAGTGTAACTATAAGAAAAATCTGCAACGAGAACTCTTGGTGGTATCGTTC
CTGCCAGAAGTGCTTCAAAGGAGCAAAGCCATATGGATACACGTACAAGTGCGGCAGCTGTTCTTGGATTGGAATGGCAA
CACCAAGATACAAGCTAGCACTCACAGCAGGTGATGACAGTGATAACGCCGAGTTTATCCTCTTTGGGAAAACGGCTCAA
CGCCTCGTGCGGAAGCCAATTGAAGCTTTGATTGACAAAATACCAGAAGGTTCTAACTTCATCCCAGATGAGATAACATG
CTTGCTTGAGAAACAATTCGTCTGGAACGTCATCATCACAGAGAGCTCACTTAGAAACTGCGAGAAAGCAAAGGTTGTGG
CTGTGCATGATAAGACTTTAAGCCCAGTTGCTCCTTCGCCCGCTTCTGCCACTACCTCCAGGAAGAGAGCGCACCCTTCT
CAGACAACACCACCAGTTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7796.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis