Browse Element(s) Details


OsAffx.7804.1.S1_at

Description tigr:9640.m03502
TID=OsAffx.7804.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3616011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36110Os.15688.2.S1_x_at11/1112+22099883..22103438calmodulin-binding protein, putative, expressed
LOC_Os12g36110Os.15688.1.S1_at11/1112+22099883..22103438calmodulin-binding protein, putative, expressed
LOC_Os12g36120NANA12+22110194..22113212retrotransposon protein, putative, unclassified
LOC_Os12g36130OsAffx.32051.1.S1_x_at8/1112+22116085..22117073hypothetical protein
LOC_Os12g36140OsAffx.20387.1.S1_x_at1/1112+22118132..22120811transposon protein, putative, unclassified
LOC_Os12g36150NANA12+22121127..22123877retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g36160OsAffx.7804.1.S1_at11/1112+22127940..22128995hypothetical protein
LOC_Os12g36170Os.53964.1.S1_at11/1112+22130214..22136367G14587-6, putative, expressed
LOC_Os12g36180Os.10153.1.S2_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.10153.1.S1_at11/1112+22139829..22147027expressed protein
LOC_Os12g36180Os.54204.1.S1_at1/1112+22139829..22147027expressed protein
LOC_Os12g36194Os.5218.1.S1_at11/1112+22149447..22156123Nucleoside diphosphate kinase 2, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7804.1.S1_at--1014--771Chr12:22128332..22128356 (25 bp)
ATGTGCCTCCTGTACGTGCCGGAGA
LOC_Os12g36160
OsAffx.7804.1.S1_at--826--8751Chr12:22128322..22128346 (25 bp)
TGTACGTGCCGGAGAATCACATGGA
LOC_Os12g36160
OsAffx.7804.1.S1_at--86--1391Chr12:22128174..22128198 (25 bp)
AGACGTTGGCACGTTCGCCACGGTC
LOC_Os12g36160
OsAffx.7804.1.S1_at--886--391Chr12:22128080..22128104 (25 bp)
ATCACCATGGCGAGGGAGACAGGCA
LOC_Os12g36160
OsAffx.7804.1.S1_at--101--5651Chr12:22128063..22128087 (25 bp)
GACAGGCAAGCATTCGATCTACCGG
LOC_Os12g36160
OsAffx.7804.1.S1_at--432--2711Chr12:22128056..22128080 (25 bp)
AAGCATTCGATCTACCGGTCGAGCT
LOC_Os12g36160
OsAffx.7804.1.S1_at--1140--3951Chr12:22128028..22128052 (25 bp)
CGGAGATCATGTCGGCGTTGCTCAT
LOC_Os12g36160
OsAffx.7804.1.S1_at--848--10711Chr12:22128011..22128035 (25 bp)
TTGCTCATGGTTTGGGTGCGGTATT
LOC_Os12g36160
OsAffx.7804.1.S1_at--334--7771Chr12:22127997..22128021 (25 bp)
GGTGCGGTATTTCGTGTACCTCCAT
LOC_Os12g36160
OsAffx.7804.1.S1_at--19--191Chr12:22127989..22128013 (25 bp)
ATTTCGTGTACCTCCATGTTTTCCA
LOC_Os12g36160
OsAffx.7804.1.S1_at--919--731Chr12:22127974..22127998 (25 bp)
ATGTTTTCCACCTGATTGGCTGCGG
LOC_Os12g36160
Target Sequence 
ATGTGCCTCCTGTACGTGCCGGAGAATCACATGGACCCCTACCCCACCATCGACGGCGTGCTCCAGCGCAACCCGGCGGC
AGCGTGGTGCACGCTTCTGGCGCCGGTGGCGCTCGTGCTGTGCGGCCTCGTCAGGGCCTCGGCCGCCACGAACGCCGGAG
ACGTTGGCACGTTCGCCACGGTCATCGCCGGCGCGTTCTGGGCCATGGACGCCGGCGCCGCCGTGCTGCTGGGGCGGGTG
ATCGCGGGGGAGATCACCATGGCGAGGGAGACAGGCAAGCATTCGATCTACCGGTCGAGCTCGTCGGAGATCATGTCGGC
GTTGCTCATGGTTTGGGTGCGGTATTTCGTGTACCTCCATGTTTTCCACCTGATTGGCTGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7804.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis