Browse Element(s) Details


OsAffx.7815.1.S1_at

Description tigr:9640.m03577
TID=OsAffx.7815.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to fiber protein Fb2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3690011/11fiber protein Fb2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36850Os.2423.1.S1_at10/1112+22558115..22559944Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36860OsAffx.32060.1.S1_s_at9/1112+22561808..22563435pathogenesis-related protein 10, putative, expressed
LOC_Os12g36870Os.20677.1.S1_at11/1112+22564266..22565433seed imbibition protein, putative, expressed
LOC_Os12g36880Os.165.1.S1_at11/1112+22566409..22567683Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36890Os.57510.1.S1_x_at11/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36890OsAffx.16586.1.S1_x_at1/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36900OsAffx.7815.1.S1_at11/1112+22583439..22588295fiber protein Fb2, putative, expressed
LOC_Os12g36910Os.17887.1.S1_at10/1112+22595349..22599454calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.50572.1.S1_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36920Os.24180.1.A1_s_at11/1112+22602273..22606636calmodulin-binding protein, putative, expressed
LOC_Os12g36930Os.51798.1.S1_at1/1112+22607943..22609245hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009414biological_processresponse to water deprivation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7815.1.S1_at--813--7451Chr12:22586334..22586358 (25 bp)
GTGTCCAATTTGCTACGATGCGGTT
LOC_Os12g36900
OsAffx.7815.1.S1_at--56--7891Chr12:22586370..22586394 (25 bp)
GGTTAGTCACATCACTTCGGAACAT
LOC_Os12g36900
OsAffx.7815.1.S1_at--419--10611Chr12:22586385..22586409 (25 bp)
TTCGGAACATCCCAGTTTCTTCAAG
LOC_Os12g36900
OsAffx.7815.1.S1_at--684--9451Chr12:22587500..22587524 (25 bp)
TCGGCGAGTTTCACATGGATCACAT
LOC_Os12g36900
OsAffx.7815.1.S1_at--1003--4691Chr12:22587555..22587579 (25 bp)
GCGGCATATCTGCAGTACCGTTATG
LOC_Os12g36900
OsAffx.7815.1.S1_at--227--9071Chr12:22587596..22587620 (25 bp)
TGCTTCACACAACACAGATCCTGAT
LOC_Os12g36900
OsAffx.7815.1.S1_at--550--4291Chr12:22587621..22587645 (25 bp)
CCTCTACTATCCTCTTTTGTTGGTA
LOC_Os12g36900
OsAffx.7815.1.S1_at--419--6611Chr12:22587639..22587663 (25 bp)
GTTGGTAACTTCACCGACACAGATT
LOC_Os12g36900
OsAffx.7815.1.S1_at--718--5571Chr12:22588045..22588066 (22 bp)
GAAAGTGCTGATGAGCCTCTGCTCC
LOC_Os12g36900
OsAffx.7815.1.S1_at--1020--5451Chr12:22588085..22588109 (25 bp)
GAACTCGGAGGAGCCAATTCGTGCA
LOC_Os12g36900
OsAffx.7815.1.S1_at--818--31Chr12:22588171..22588195 (25 bp)
ATTGAAGGCAACAGTCGCTTCCGCG
LOC_Os12g36900
Target Sequence 
GTGTCCAATTTGCTACGATGCGGTTGGGATGGACTTGGTTAGTCACATCACTTCGGAACATCCCAGTTTCTTCAAGGGCA
AATGGAGAAATCGGCGAGTTTCACATGGATCACATTCTTCAACGCGTGCCACATTAAAAAAGGACGCGGCATATCTGCAG
TACCGTTATGGAGGATCCACACGTGCTGCTTCACACAACACAGATCCTGATCCTCTACTATCCTCTTTTGTTGGTAACTT
CACCGACACAGATTTACCAAAAGATGTACAACAAGAGTTCCGAGATGAAACGGATGAGAAAAGTGATTCCTTAGTACAGA
AGGAACAGAAACCGGTGGAAAGTGCTGATGAGCCTCTGCTCCCTGAGGTCAAGGAAGAGAGAACTCGGAGGAGCCAATTC
GTGCAGGGGCTGGTATTGTCCCTGATGTTTGATGACATCTTGTGAAGAGTTACATTCTAAAAATTGATTGAAGGCAACAG
TCGCTTCCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7815.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis