Browse Element(s) Details


OsAffx.32060.1.S1_s_at

Description tigr:9640.m03573
TID=OsAffx.32060.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=pathogenesis-related protein PR-10a
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g368609/11pathogenesis-related protein 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36810Os.9731.1.S1_at10/1112+22539245..22542581glycoside hydrolase family 28 protein, putative, expressed
LOC_Os12g36820OsAffx.7814.1.S1_at11/1112+22544634..22545174hypothetical protein
LOC_Os12g36830Os.5031.1.S1_at10/1112+22547233..22548410pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840OsAffx.32059.1.S1_at10/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840Os.47802.1.A1_at9/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36850Os.2423.1.S1_at10/1112+22558115..22559944Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36860OsAffx.32060.1.S1_s_at9/1112+22561808..22563435pathogenesis-related protein 10, putative, expressed
LOC_Os12g36870Os.20677.1.S1_at11/1112+22564266..22565433seed imbibition protein, putative, expressed
LOC_Os12g36880Os.165.1.S1_at11/1112+22566409..22567683Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36890Os.57510.1.S1_x_at11/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36890OsAffx.16586.1.S1_x_at1/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36900OsAffx.7815.1.S1_at11/1112+22583439..22588295fiber protein Fb2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32060.1.S1_s_at--823--3511NONE
CATGAAGCTTAACCCCGATGCGGGA
NONE
OsAffx.32060.1.S1_s_at--395--11NONE
AGCTTAACCCCGATGCGGGAGTCGG
NONE
OsAffx.32060.1.S1_s_at--49--9151Chr12:22562943..22562967 (25 bp)
TGCGGGAGTCGGGAATACATACAAG
LOC_Os12g36860
OsAffx.32060.1.S1_s_at--96--7471Chr12:22562982..22563006 (25 bp)
GTGTGACAATGCAGCACGCGTGCTA
LOC_Os12g36860
OsAffx.32060.1.S1_s_at--885--1831Chr12:22562997..22563021 (25 bp)
ACGCGTGCTAAAGTCAGAGGTGCTG
LOC_Os12g36860
OsAffx.32060.1.S1_s_at--72--2771Chr12:22563163..22563187 (25 bp)
AAGACGATGGTCGACGGCTACTTCG
LOC_Os12g36860
OsAffx.32060.1.S1_s_at--113--9691Chr12:22563222..22563246 (25 bp)
TCACCCTGCCGAATTCGCCTGAAAA
LOC_Os12g36860
OsAffx.32060.1.S1_s_at--945--3151Chr12:22563233..22563257 (25 bp)
AATTCGCCTGAAAACTGTCTCAACC
LOC_Os12g36860
OsAffx.32060.1.S1_s_at--1017--8691Chr12:22563248..22563272 (25 bp)
TGTCTCAACCAACACAATCCATGGC
LOC_Os12g36860
OsAffx.32060.1.S1_s_at--272--2471Chr12:22563258..22563282 (25 bp)
AACACAATCCATGGCTGATAATTAA
LOC_Os12g36860
OsAffx.32060.1.S1_s_at--936--10471Chr12:22563279..22563303 (25 bp)
TTAAATAATGCGAGCTCCAATTTTC
LOC_Os12g36860
Target Sequence 
CATGAAGCTTAACCCCGATGCGGGAGTCGGGAATACATACAAGACCCGAGTGGCGGTGTGTGACAATGCAGCACGCGTGC
TAAAGTCAGAGGTGCTGGAGGCAGAAAGCAAGGTGGGCAAGCTCAAGTCGCACTCGACGGAGACGAAGCTGGAGGGCACC
GGCGATGGCTCCTGCGTGGCCAAGCTCAAGGTGGAGTACGAGCTCGCCGACGGCAGCTCGCTGTCGCCGGAGCAGGAGAA
GACGATGGTCGACGGCTACTTCGGCATGCTCAAGATGATGGAGGCGTACCTCGCCGCTCACCCTGCCGAATTCGCCTGAA
AACTGTCTCAACCAACACAATCCATGGCTGATAATTAAATAATGCGAGCTCCAATTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32060.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis