Browse Element(s) Details


OsAffx.7814.1.S1_at

Description tigr:9640.m03568
TID=OsAffx.7814.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3682011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36780NANA12+22515213..22521028retrotransposon protein, putative, unclassified
LOC_Os12g36790NANA12+22521344..22524940retrotransposon protein, putative, unclassified
LOC_Os12g36800NANA12+22527783..22528107hypothetical protein
LOC_Os12g36810Os.9731.1.S1_at10/1112+22539245..22542581glycoside hydrolase family 28 protein, putative, expressed
LOC_Os12g36820OsAffx.7814.1.S1_at11/1112+22544634..22545174hypothetical protein
LOC_Os12g36830Os.5031.1.S1_at10/1112+22547233..22548410pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840OsAffx.32059.1.S1_at10/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840Os.47802.1.A1_at9/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36850Os.2423.1.S1_at10/1112+22558115..22559944Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36860OsAffx.32060.1.S1_s_at9/1112+22561808..22563435pathogenesis-related protein 10, putative, expressed
LOC_Os12g36870Os.20677.1.S1_at11/1112+22564266..22565433seed imbibition protein, putative, expressed
LOC_Os12g36880Os.165.1.S1_at11/1112+22566409..22567683Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36890Os.57510.1.S1_x_at11/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36890OsAffx.16586.1.S1_x_at1/1112+22569379..22573532cellulose synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7814.1.S1_at--996--6171Chr12:22544795..22544819 (25 bp)
GAGGAGAGCTCTGGATCCGTCGGGC
LOC_Os12g36820
OsAffx.7814.1.S1_at--195--3931Chr12:22544819..22545111 (25 bp)
CGGCGGCGAGAATATTTTCGCTGGC
LOC_Os12g36820
OsAffx.7814.1.S1_at--761--3931Chr12:22545094..22545114 (21 bp)
CGGCGAGAATATTTTCGCTGGCGGT
LOC_Os12g36820
OsAffx.7814.1.S1_at--418--9332Chr12:22545104..22545128 (25 bp)
TCGCTGGCGGTCCTCTTAAGGATGC
LOC_Os12g36820
OsAffx.7814.1.S1_at--1099--3912Chr12:22545107..22545131 (25 bp)
CTGGCGGTCCTCTTAAGGATGCGCT
LOC_Os12g36820
OsAffx.7814.1.S1_at--563--8351Chr12:22545109..22545133 (25 bp)
GGCGGTCCTCTTAAGGATGCGCTTA
LOC_Os12g36820
OsAffx.7814.1.S1_at--1091--4671Chr12:22545110..22545134 (25 bp)
GCGGTCCTCTTAAGGATGCGCTTAT
LOC_Os12g36820
OsAffx.7814.1.S1_at--841--7791Chr12:22545112..22545136 (25 bp)
GGTCCTCTTAAGGATGCGCTTATGA
LOC_Os12g36820
OsAffx.7814.1.S1_at--85--7271Chr12:22545113..22545137 (25 bp)
GTCCTCTTAAGGATGCGCTTATGAA
LOC_Os12g36820
OsAffx.7814.1.S1_at--750--4291Chr12:22545115..22545139 (25 bp)
CCTCTTAAGGATGCGCTTATGAAAA
LOC_Os12g36820
OsAffx.7814.1.S1_at--796--9771Chr12:22545120..22545144 (25 bp)
TAAGGATGCGCTTATGAAAATTGAT
LOC_Os12g36820
Target Sequence 
GAGGAGAGCTCTGGATCCGTCGGGCGGCGGCGAGAATATTTTCGCTGGCGGTCCTCTTAAGGATGCGCTTATGAAAATTG
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7814.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis