Browse Element(s) Details


Os.5031.1.S1_at

Description gb:AB127580.1
DB_XREF= gi:38678113
GEN=RSOsPR10
TID=Os.5031.1
CNT=22
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.5031 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) RSOsPR10 mRNA for root specific pathogenesis-related protein 10, complete cds.
PROD=root specific pathogenesis-related protein 10
FL= gb:AB127580.1 gb:AK061606.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3683010/11pathogenesis-related protein 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36790NANA12+22521344..22524940retrotransposon protein, putative, unclassified
LOC_Os12g36800NANA12+22527783..22528107hypothetical protein
LOC_Os12g36810Os.9731.1.S1_at10/1112+22539245..22542581glycoside hydrolase family 28 protein, putative, expressed
LOC_Os12g36820OsAffx.7814.1.S1_at11/1112+22544634..22545174hypothetical protein
LOC_Os12g36830Os.5031.1.S1_at10/1112+22547233..22548410pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840OsAffx.32059.1.S1_at10/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36840Os.47802.1.A1_at9/1112+22551624..22552996pathogenesis-related protein 10, putative, expressed
LOC_Os12g36850Os.2423.1.S1_at10/1112+22558115..22559944Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36860OsAffx.32060.1.S1_s_at9/1112+22561808..22563435pathogenesis-related protein 10, putative, expressed
LOC_Os12g36870Os.20677.1.S1_at11/1112+22564266..22565433seed imbibition protein, putative, expressed
LOC_Os12g36880Os.165.1.S1_at11/1112+22566409..22567683Pathogenesis-related protein Bet v I family protein, expressed
LOC_Os12g36890Os.57510.1.S1_x_at11/1112+22569379..22573532cellulose synthase family protein, putative, expressed
LOC_Os12g36890OsAffx.16586.1.S1_x_at1/1112+22569379..22573532cellulose synthase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5031.1.S1_at--1012--7471Chr12:22547453..22547477 (25 bp)
GTGTGGAAGGTCTTCTCCGACGCGC
LOC_Os12g36830
Os.5031.1.S1_at--378--1731Chr12:22547555..22547765 (25 bp)
ACCATGAAGCTCAACCCTGCTGTGG
LOC_Os12g36830
Os.5031.1.S1_at--109--2711NONE
AAGCTCAACCCTGCTGTGGATGATG
NONE
Os.5031.1.S1_at--613--2591Chr12:22547918..22547942 (25 bp)
AACGCAGCTCACATTATCAAGTCAG
LOC_Os12g36830
Os.5031.1.S1_at--903--3311Chr12:22547927..22547951 (25 bp)
CACATTATCAAGTCAGAGGTTCTGG
LOC_Os12g36830
Os.5031.1.S1_at--546--6151Chr12:22547942..22547966 (25 bp)
GAGGTTCTGGATGTGCCGGCCGGAA
LOC_Os12g36830
Os.5031.1.S1_at--1076--3731Chr12:22547981..22548005 (25 bp)
CTCAAGTCGCACGTGACAGAGACGA
LOC_Os12g36830
Os.5031.1.S1_at--44--2131Chr12:22547996..22548020 (25 bp)
ACAGAGACGAAGATCGAGGCCGCCG
LOC_Os12g36830
Os.5031.1.S1_at--207--4491Chr12:22548017..22548041 (25 bp)
GCCGGTGCCGGCTCTTGCTTGGCCA
LOC_Os12g36830
Os.5031.1.S1_at--195--251Chr12:22548200..22548224 (25 bp)
ATATACATCCATCTCCGTATTGCTG
LOC_Os12g36830
Os.5031.1.S1_at--686--571Chr12:22548206..22548230 (25 bp)
ATCCATCTCCGTATTGCTGCTTCCT
LOC_Os12g36830
Target Sequence 
GTGTGGAAGGTCTTCTCCGACGCGCCCGCCATGCCCAAGGTTTGTGCCGGCTTCATCGACGCCATTGAGGTCGAGGGGGA
TGGCGGGGCGGGCACTGTCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGGGGGTCATTCAAAACACGTGTGGTGG
CACGTGACAACGCAGCTCACATTATCAAGTCAGAGGTTCTGGATGTGCCGGCCGGAAGTAAGGTGGGCAAGCTCAAGTCG
CACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGGCCAAGATAAACGTGGAGTATGAGCTCGAGGA
CGGCGGCTCNCTGTCGCCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGACTACC
TCGTCGCTCACCCTACCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCTCCGTATTGCTGCTTCC
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis